RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA454503" and tax_kingdom = "Thermoproteati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermoproteati · 2 ✖

bioproject 1

  • PRJNA454503 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12572757 12572757 PRJNA454503_P_NODE_75350_length_205_cov_0.902778_g75021_i0 PRJNA454503 75350 205 0.902778 1.8506949 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 95.9 2.07e-24   NR MDF2782721.1 2169593 g75021 i0 96 2.18048780487805 50 2 73.2 0 205 56 5 54 MDF2782721.1 secB [Nitrososphaeraceae archaeon] diamond 447 95.9 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
31719678 31719678 PRJNA454503_P_NODE_69357_length_207_cov_0.890411_g69028_i0 PRJNA454503 69357 207 0.890411 1.84315077 Fervidicoccus sp. 2060324 Archaea Archaea 44.3 0.00502   NR PNV80394.1 2060324 g69028 i0 53.2 1.2463768115942 47 21 68.1 1 32 172 10 55 PNV80394.1 MAG: thymidine kinase [Fervidicoccus sp.] diamond 258 44.3 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Fervidicoccales Fervidicoccaceae Fervidicoccus Fervidicoccus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;