RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA454154" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA454154 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26727523 26727523 PRJNA454154_S_NODE_181_length_236_cov_11.512563_g178_i0 PRJNA454154 181 236 11.512563 27.16964868 Pseudomonas syringae group genomosp. 7 251699 Bacteria Bacteria 43.5 0.00627   NR WP_395587273.1 251699 g178 i0 41.2 0.648305084745763 51 27 62.3 2 62 208 2 51 WP_395587273.1 hypothetical protein, partial [Pseudomonas syringae group genomosp. 7] diamond 153 43.5 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 7
30771400 30771400 PRJNA454154_S_NODE_654_length_152_cov_4.573913_g651_i0 PRJNA454154 654 152 4.573913 6.95234776 Magnetococcus sp. YQC-3 2763146 Bacteria Bacteria 47.8 1.72e-4   NR MEO5350766.1 2763146 g651 i0 59.5 3.23684210526316 37 15 73 0 152 42 238 274 MEO5350766.1 leishmanolysin [Magnetococcus sp. YQC-3] diamond 492 47.8 1 Bacteria   Pseudomonadati Pseudomonadota Magnetococcia Magnetococcales Magnetococcaceae Magnetococcus Magnetococcus sp. YQC-3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;