RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA454154" and tax_phylum = "Hemichordata"

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tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA454154 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32289527 32289527 PRJNA454154_S_NODE_179_length_237_cov_3.160000_g176_i0 PRJNA454154 179 237 3.16 7.4892 Ptychodera flava 63121 Hemichordata other_Eukaryota 74.7 9.92e-15   NR XP_070568554.1 63121 g176 i0 68.3 2.35443037974684 63 20 79.7 0 6 194 56 118 XP_070568554.1 large ribosomal subunit protein eL24-like [Ptychodera flava] diamond 558 74.7 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
32794033 32794033 PRJNA454154_S_NODE_300_length_196_cov_9.805031_g297_i0 PRJNA454154 300 196 9.805031 19.21786076 Ptychodera flava 63121 Hemichordata other_Eukaryota 83.2 1.76e-18   NR XP_070580680.1 63121 g297 i0 54.5 4.05612244897959 66 27 98 2 5 196 73 137 XP_070580680.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [Ptychodera flava] diamond 795 83.2 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;