RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA454154" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA454154 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29839596 29839596 PRJNA454154_S_NODE_391_length_183_cov_7.602740_g388_i0 PRJNA454154 391 183 7.60274 13.9130142 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 42 0.0307   NR XP_013249139.1 5801 g388 i0 76 1.59016393442623 25 6 41 0 1 75 220 244 XP_013249139.1 60S ribosomal protein L8, putative [Eimeria acervulina] diamond 291 42.4 0.990566037735849 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina
31940912 31940912 PRJNA454154_S_NODE_517_length_166_cov_1.131783_g514_i0 PRJNA454154 517 166 1.131783 1.87875978 Hondaea fermentalgiana 2315210 SAR_Eukaryotes SAR_Eukaryotes 50.1 5.64e-6   NR GBG29256.1 2315210 g514 i0 88.9 0.487951807228916 27 3 48.8 0 159 79 79 105 GBG29256.1 Non-specific lipid-transfer protein [Hondaea fermentalgiana] diamond 81 50.1 1 Eukaryota Sar     Bigyra Thraustochytrida Thraustochytriidae Hondaea Hondaea fermentalgiana
32321104 32321104 PRJNA454154_S_NODE_199_length_228_cov_4.277487_g196_i0 PRJNA454154 199 228 4.277487 9.75267036 Stentor coeruleus 5963 SAR_Eukaryotes SAR_Eukaryotes 62.4 6.75e-11   NR OMJ89045.1 5963 g196 i0 66 3.27631578947368 50 16 64.5 1 211 65 17 66 OMJ89045.1 hypothetical protein SteCoe_8868 [Stentor coeruleus] diamond 747 62.4 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;