RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA454154" and tax_clade = "Embryophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 3 ✖

bioproject 1

  • PRJNA454154 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26664322 26664322 PRJNA454154_S_NODE_81_length_299_cov_222.278626_g78_i0 PRJNA454154 81 299 222.278626 664.61309174 Aristolochia fimbriata 158543 Plants Plants 44.7 0.0155   NR KAG9438844.1 158543 g78 i0 57.8 0.451505016722408 45 10 45.2 1 24 158 460 495 KAG9438844.1 hypothetical protein H6P81_021249 [Aristolochia fimbriata] diamond 135 44.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Piperales Aristolochiaceae Aristolochia Aristolochia fimbriata
27581591 27581591 PRJNA454154_S_NODE_224_length_215_cov_7.876404_g221_i0 PRJNA454154 224 215 7.876404 16.9342686 Ceratodon purpureus 3225 Plants Plants 44.7 7.81e-4   NR KAG0504195.1 3225 g221 i0 56.4 0.544186046511628 39 17 54.4 0 90 206 38 76 KAG0504195.1 hypothetical protein KC19_N006800 [Ceratodon purpureus] diamond 117 44.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Bryopsida Pseudoditrichales Ditrichaceae Ceratodon Ceratodon purpureus
28166264 28166264 PRJNA454154_S_NODE_285_length_199_cov_2.302469_g282_i0 PRJNA454154 285 199 2.302469 4.58191331 Eukaryota 2759 Plants Plants 98.2 7.68e-24   NR KAF2325664.1 3981 g282 i0 75 27.8592964824121 56 14 84.4 0 1 168 129 184 KAF2325664.1 hypothetical protein GH714_032390 [Hevea brasiliensis] diamond 5544 98.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Euphorbiaceae Hevea Hevea brasiliensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;