RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA453567" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA453567 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1716646 1716646 PRJNA453567_P_NODE_162_length_2175_cov_5.218896_g148_i0 PRJNA453567 162 2175 5.218896 113.510988 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 689 1.42e-239   NR HYE96181.1 2838334 g148 i0 60.2 5.98758620689655 620 212 81.9 8 159 1940 6 616 HYE96181.1 glutamine--fructose-6-phosphate transaminase (isomerizing) [Rubricoccaceae bacterium] diamond 13023 689 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
31403504 31403504 PRJNA453567_P_NODE_27876_length_166_cov_1.209302_g27639_i0 PRJNA453567 27876 166 1.209302 2.00744132 Rhodothermia bacterium 2497633 Bacteria Bacteria 47.8 1.99e-4   NR MBT8400481.1 2497633 g27639 i0 41.7 0.867469879518072 48 28 86.7 0 161 18 188 235 MBT8400481.1 hypothetical protein [Rhodothermia bacterium] diamond 144 47.8 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia       Rhodothermia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;