RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA453567" and tax_phylum = "Fidelibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA453567 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27755985 27755985 PRJNA453567_P_NODE_12564_length_260_cov_1.735426_g12327_i0 PRJNA453567 12564 260 1.735426 4.5121076 FCB group 1783270 Bacteria Bacteria 67.4 9.62e-11   NR HOU17097.1 2026760 g12327 i0 45.8 4.75384615384615 83 44 95.8 1 10 258 292 373 HOU17097.1 glycoside hydrolase family 3 C-terminal domain-containing protein [Fidelibacterota bacterium] diamond 1236 67.8 0.994100294985251 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
30518444 30518444 PRJNA453567_P_NODE_16953_length_217_cov_1.944444_g16716_i0 PRJNA453567 16953 217 1.944444 4.21944348 Fidelibacterota bacterium 2026760 Bacteria Bacteria 53.5 9.11e-7   NR HIA29189.1 2026760 g16716 i0 51 0.705069124423963 51 25 70.5 0 64 216 1 51 HIA29189.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase [Fidelibacterota bacterium] diamond 153 53.5 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;