RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA453567" and tax_phylum = "Candidatus Rokuibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Rokuibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA453567 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29855071 29855071 PRJNA453567_P_NODE_51_length_3190_cov_3.941960_g47_i0 PRJNA453567 51 3190 3.94196 125.748524 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 58.9 1.99e-4   NR PYM49605.1 2053607 g47 i0 24.6 0.405329153605016 431 256 40.4 18 3189 1900 755 1119 PYM49605.1 MAG: hypothetical protein DME14_08270, partial [Candidatus Rokuibacteriota bacterium] diamond 1293 58.9 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
29918304 29918304 PRJNA453567_P_NODE_32331_length_154_cov_1.333333_g32094_i0 PRJNA453567 32331 154 1.333333 2.05333282 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 52.8 3.2e-6   NR PYN97724.1 2053607 g32094 i0 57.8 7.24675324675325 45 19 87.7 0 5 139 22 66 PYN97724.1 MAG: hypothetical protein DMD91_16785 [Candidatus Rokuibacteriota bacterium] diamond 1116 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
32352692 32352692 PRJNA453567_P_NODE_9379_length_311_cov_1.653285_g9142_i0 PRJNA453567 9379 311 1.653285 5.14171635 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 55.8 1.73e-6   NR MBI4012193.1 2053607 g9142 i0 47.4 0.733118971061093 76 35 73.3 2 13 240 208 278 MBI4012193.1 ankyrin repeat domain-containing protein [Candidatus Rokuibacteriota bacterium] diamond 228 55.8 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;