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contig_metadata

16 rows where analysis = "diamond", bioproject = "PRJNA453111" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 16 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA453111 · 16 ✖

analysis 1

  • diamond · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2992027 2992027 PRJNA453111_P_NODE_10723_length_249_cov_0.875000_g10631_i0 PRJNA453111 10723 249 0.875 2.17875 Metazoa 33208 Chordata Chordata 151 3.06e-40   NR XP_067987547.1 7769 g10631 i0 83.1 67 83 14 100 0 1 249 2686 2768 XP_067987547.1 cytoplasmic dynein 1 heavy chain 1 [Myxine glutinosa] diamond 16683 152 0.993421052631579 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
2992072 2992072 PRJNA453111_P_NODE_3243_length_452_cov_1.606860_g3151_i0 PRJNA453111 3243 452 1.60686 7.2630072 Metazoa 33208 Chordata Chordata 179 4.59e-50   NR XP_067963046.1 7769 g3151 i0 57.8 167.661504424779 147 62 97.6 0 442 2 336 482 XP_067963046.1 RNA polymerase-associated protein LEO1 [Myxine glutinosa] diamond 75783 179 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
12571792 12571792 PRJNA453111_P_NODE_9990_length_251_cov_0.865169_g9898_i0 PRJNA453111 9990 251 0.865169 2.17157419 Metazoa 33208 Chordata Chordata 122 6.819999999999999e-32   NR KYO24442.1 8496 g9898 i0 69.5 22.5298804780876 82 25 98 0 4 249 129 210 KYO24442.1 hydroxyacyl-coenzyme A dehydrogenase, mitochondrial [Alligator mississippiensis] diamond 5655 123 0.991869918699187 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
27265833 27265833 PRJNA453111_P_NODE_12363_length_243_cov_1.358824_g12271_i0 PRJNA453111 12363 243 1.358824 3.30194232 Ochotona princeps 9978 Chordata Chordata 45.8 0.00292   NR XP_058536338.1 9978 g12271 i0 42.9 1.95061728395062 42 24 51.9 0 46 171 136 177 XP_058536338.1 brain-specific serine protease 4 [Ochotona princeps] diamond 474 46.2 0.991341991341991 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Ochotonidae Ochotona Ochotona princeps
27297367 27297367 PRJNA453111_P_NODE_8243_length_282_cov_1.000000_g8151_i0 PRJNA453111 8243 282 1 2.82 Chelonoidis abingdonii 106734 Chordata Chordata 48.9 1.88e-4   NR XP_032634775.1 106734 g8151 i0 44.8 1.18085106382979 58 30 60.6 2 252 82 59 115 XP_032634775.1 pre-rRNA-processing protein TSR2 homolog [Chelonoidis abingdonii] diamond 333 48.9 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Testudinidae Chelonoidis Chelonoidis abingdonii
27408650 27408650 PRJNA453111_P_NODE_7423_length_297_cov_1.330357_g7331_i0 PRJNA453111 7423 297 1.330357 3.95116029 Psittaciformes 9223 Chordata Chordata 45.1 0.00233   NR XP_005142059.1 13146 g7331 i0 35.3 6.87878787878788 85 52 82.8 1 253 8 7 91 XP_005142059.1 tubulin-specific chaperone A [Melopsittacus undulatus] diamond 2043 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittaculidae Melopsittacus Melopsittacus undulatus
28939423 28939423 PRJNA453111_P_NODE_6828_length_310_cov_1.371308_g6736_i0 PRJNA453111 6828 310 1.371308 4.2510548 Myotis myotis 51298 Chordata Chordata 42.4 0.0378   NR XP_036201646.1 51298 g6736 i0 37.9 0.561290322580645 58 34 54.2 1 239 72 8 65 XP_036201646.1 microtubule-associated proteins 1A/1B light chain 3B isoform X2 [Myotis myotis] diamond 174 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis myotis
29349845 29349845 PRJNA453111_P_NODE_2749_length_494_cov_1.638955_g2657_i0 PRJNA453111 2749 494 1.638955 8.0964377 Staurois parvus 386267 Chordata Chordata 58.5 1.2e-7   NR CAI9533415.1 386267 g2657 i0 40 2.05263157894737 110 47 55.3 4 392 120 1 110 CAI9533415.1 unnamed protein product [Staurois parvus] diamond 1014 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
29823154 29823154 PRJNA453111_P_NODE_6331_length_322_cov_0.927711_g6239_i0 PRJNA453111 6331 322 0.927711 2.98722942 Naja naja 35670 Chordata Chordata 116 1.4500000000000002e-27   NR KAG8129326.1 35670 g6239 i0 72.4 14.4782608695652 76 21 70.8 0 93 320 21 96 KAG8129326.1 hypothetical protein E2320_016025 [Naja naja] diamond 4662 116 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Naja Naja naja
30202232 30202232 PRJNA453111_P_NODE_10652_length_249_cov_0.875000_g10560_i0 PRJNA453111 10652 249 0.875 2.17875 Eleutherodactylus coqui 57060 Chordata Chordata 43.9 0.0163   NR KAG9488115.1 57060 g10560 i0 52.8 0.433734939759036 36 17 43.4 0 58 165 354 389 KAG9488115.1 hypothetical protein GDO78_007745 [Eleutherodactylus coqui] diamond 108 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Eleutherodactylidae Eleutherodactylus Eleutherodactylus coqui
30408599 30408599 PRJNA453111_P_NODE_2753_length_494_cov_1.097387_g2661_i0 PRJNA453111 2753 494 1.097387 5.42109178 Psittaciformes 9223 Chordata Chordata 46.6 0.0208   NR NWS44501.1 141839 g2661 i0 32.3 1.80364372469636 65 44 39.5 0 54 248 1086 1150 NWS44501.1 EDC4 protein [Probosciger aterrimus] diamond 891 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Cacatuidae Probosciger Probosciger aterrimus
30455592 30455592 PRJNA453111_P_NODE_2193_length_554_cov_15.280665_g2101_i0 PRJNA453111 2193 554 15.280665 84.6548841 Branchiostoma belcheri 7741 Chordata Chordata 130 7.189999999999998e-35   NR XP_019626026.1 7741 g2101 i0 45.5 1.52166064981949 132 71 71.5 1 482 87 18 148 XP_019626026.1 PREDICTED: epididymal secretory protein E1-like [Branchiostoma belcheri] diamond 843 130 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
31356438 31356438 PRJNA453111_P_NODE_6736_length_312_cov_2.255230_g6644_i0 PRJNA453111 6736 312 2.25523 7.0363176 Branchiostoma 7737 Chordata Chordata 82.8 7.47e-16   NR XP_035689700.1 7739 g6644 i0 40 4.02884615384615 110 44 99 3 2 310 1804 1898 XP_035689700.1 uncharacterized protein LOC118424993 [Branchiostoma floridae] diamond 1257 83.2 0.995192307692308 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
31529995 31529995 PRJNA453111_P_NODE_3696_length_422_cov_1.292264_g3604_i0 PRJNA453111 3696 422 1.292264 5.45335408 Hemicordylus capensis 884348 Chordata Chordata 57.4 2.05e-6   NR XP_053121534.1 884348 g3604 i0 28.4 5.01184834123223 141 97 97.4 2 412 2 495 635 XP_053121534.1 angiotensin-converting enzyme isoform X2 [Hemicordylus capensis] diamond 2115 57.4 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Cordylidae Hemicordylus Hemicordylus capensis
32337218 32337218 PRJNA453111_P_NODE_2399_length_530_cov_1.507659_g2307_i0 PRJNA453111 2399 530 1.507659 7.9905927 Aves 8782 Chordata Chordata 187 1.9999999999999998e-54   NR NP_001353263.2 9031 g2307 i0 59.3 4.34150943396226 162 53 84.3 1 83 529 24 185 NP_001353263.2 selenide, water dikinase 3 [Gallus gallus] diamond 2301 188 0.99468085106383 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
32479156 32479156 PRJNA453111_P_NODE_4639_length_375_cov_1.496689_g4547_i0 PRJNA453111 4639 375 1.496689 5.61258375 Nestor notabilis 176057 Chordata Chordata 48.1 2.32e-4   NR XP_010019090.1 176057 g4547 i0 50 0.704 48 23 38.4 1 157 14 14 60 XP_010019090.1 PREDICTED: heterogeneous nuclear ribonucleoprotein L-like, partial [Nestor notabilis] diamond 264 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittacidae Nestor Nestor notabilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;