RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA453111" and tax_phylum = "Annelida"

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tax_superkingdom 1

tax_phylum 1

  • Annelida · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA453111 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
441500 441500 PRJNA453111_P_NODE_9041_length_267_cov_1.190722_g8949_i0 PRJNA453111 9041 267 1.190722 3.17922774 Metazoa 33208 Annelida Annelida 142 1.1e-39   NR CAH1787092.1 6347 g8949 i0 78.4 124.584269662921 88 19 98.9 0 2 265 4 91 CAH1787092.1 unnamed protein product [Owenia fusiformis] diamond 33264 143 0.993006993006993 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Oweniidae Owenia Owenia fusiformis
2368234 2368234 PRJNA453111_P_NODE_12022_length_244_cov_1.801170_g11930_i0 PRJNA453111 12022 244 1.80117 4.3948548 Metazoa 33208 Annelida Annelida 163 1.0899999999999999e-47   NR KAK2157618.1 53620 g11930 i0 96.2 24.1844262295082 79 3 97.1 0 1 237 133 211 KAK2157618.1 hypothetical protein LSH36_188g09042 [Paralvinella palmiformis] diamond 5901 163 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Terebellida Alvinellidae Paralvinella Paralvinella palmiformis
9369278 9369278 PRJNA453111_P_NODE_12468_length_243_cov_0.905882_g12376_i0 PRJNA453111 12468 243 0.905882 2.20129326 Ridgeia piscesae 27915 Annelida Annelida 81.3 8.61e-17   NR KAK2185282.1 27915 g12376 i0 54.7 6.65432098765432 75 33 91.4 1 224 3 14 88 KAK2185282.1 hypothetical protein NP493_241g06128 [Ridgeia piscesae] diamond 1617 81.3 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Siboglinidae Ridgeia Ridgeia piscesae
26981117 26981117 PRJNA453111_P_NODE_11202_length_247_cov_0.885057_g11110_i0 PRJNA453111 11202 247 0.885057 2.18609079 Owenia fusiformis 6347 Annelida Annelida 57.8 2.7e-8   NR CAH1788885.1 6347 g11110 i0 50.8 0.740890688259109 61 25 68 2 14 181 4 64 CAH1788885.1 unnamed protein product [Owenia fusiformis] diamond 183 57.8 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Oweniidae Owenia Owenia fusiformis
28086689 28086689 PRJNA453111_P_NODE_8865_length_270_cov_2.147208_g8773_i0 PRJNA453111 8865 270 2.147208 5.7974616 Lamellibrachia satsuma 104711 Annelida Annelida 129 6.98e-33   NR KAI0231160.1 104711 g8773 i0 66.7 2.97777777777778 90 30 100 0 270 1 368 457 KAI0231160.1 Thioredoxin reductase 2, mitochondrial [Lamellibrachia satsuma] diamond 804 129 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Siboglinidae Lamellibrachia Lamellibrachia satsuma
28465844 28465844 PRJNA453111_P_NODE_9106_length_266_cov_1.196891_g9014_i0 PRJNA453111 9106 266 1.196891 3.18373006 Paralvinella palmiformis 53620 Annelida Annelida 50.8 6.95e-5   NR KAK2144972.1 53620 g9014 i0 42.2 3.64285714285714 64 37 72.2 0 266 75 87 150 KAK2144972.1 hypothetical protein LSH36_714g00018 [Paralvinella palmiformis] diamond 969 50.8 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Terebellida Alvinellidae Paralvinella Paralvinella palmiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;