RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA451191" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA451191 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29633505 29633505 PRJNA451191_P_NODE_54190_length_203_cov_0.915493_g53919_i0 PRJNA451191 54190 203 0.915493 1.85845079 Victivallales bacterium 2212475 Bacteria Bacteria 40 0.0224   NR MBR4901995.1 2212475 g53919 i0 39 0.605911330049261 41 23 57.6 1 35 151 3 43 MBR4901995.1 hypothetical protein [Victivallales bacterium] diamond 123 40 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
29760045 29760045 PRJNA451191_P_NODE_47531_length_209_cov_0.878378_g47260_i0 PRJNA451191 47531 209 0.878378 1.83581002 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42 0.0446   NR MFN5655454.1 2026799 g47260 i0 32.7 0.789473684210526 55 35 78.9 1 43 207 354 406 MFN5655454.1 oligosaccharide flippase family protein [Verrucomicrobiota bacterium] diamond 165 42 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29791611 29791611 PRJNA451191_P_NODE_34931_length_241_cov_1.288889_g34660_i0 PRJNA451191 34931 241 1.288889 3.10622249 Opitutia bacterium 2026771 Bacteria Bacteria 43.5 0.0184   NR MBI5425804.1 2026771 g34660 i0 44.7 1.1701244813278 47 26 58.5 0 39 179 247 293 MBI5425804.1 MFS transporter [Opitutia bacterium] diamond 282 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
31972662 31972662 PRJNA451191_P_NODE_47478_length_209_cov_0.878378_g47207_i0 PRJNA451191 47478 209 0.878378 1.83581002 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 54.7 9.04e-7   NR MCW5559863.1 2499141 g47207 i0 74.4 1.10526315789474 39 10 56 0 91 207 8 46 MCW5559863.1 type II secretion system protein [Verrucomicrobiia bacterium] diamond 231 54.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;