RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA450632" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA450632 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30802762 30802762 PRJNA450632_P_NODE_20854_length_164_cov_1.240310_g20675_i0 PRJNA450632 20854 164 1.24031 2.0341084 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 90.1 6.62e-20   NR XP_002682721.1 5762 g20675 i0 91.1 0.823170731707317 45 4 82.3 0 137 3 1 45 XP_002682721.1 uncharacterized protein NAEGRDRAFT_77952 [Naegleria gruberi] diamond 135 90.1 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
32415779 32415779 PRJNA450632_P_NODE_18959_length_175_cov_1.378571_g18780_i0 PRJNA450632 18959 175 1.378571 2.41249925 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 102 2.44e-26   NR XP_002672751.1 5762 g18780 i0 89.5 0.977142857142857 57 6 97.7 0 173 3 39 95 XP_002672751.1 uncharacterized protein NAEGRDRAFT_81126 [Naegleria gruberi] diamond 171 102 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;