RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA450632" and tax_kingdom = "Metazoa"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA450632 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28560521 28560521 PRJNA450632_P_NODE_23447_length_153_cov_0.855932_g23268_i0 PRJNA450632 23447 153 0.855932 1.30957596 Bufotes viridis 30338 Chordata Chordata 44.7 0.00223   NR CAK8629749.1 30338 g23268 i0 64.7 0.666666666666667 34 12 66.7 0 121 20 331 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 102 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
29318097 29318097 PRJNA450632_P_NODE_14109_length_213_cov_1.769663_g13930_i0 PRJNA450632 14109 213 1.769663 3.76938219 Pleurodeles waltl 8319 Chordata Chordata 54.7 9.76e-7   NR KAJ1185330.1 8319 g13930 i0 74.2 3.47887323943662 31 8 43.7 0 1 93 22 52 KAJ1185330.1 hypothetical protein NDU88_002123 [Pleurodeles waltl] diamond 741 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
32793966 32793966 PRJNA450632_P_NODE_14260_length_211_cov_3.193182_g14081_i0 PRJNA450632 14260 211 3.193182 6.73761402 Stegostoma tigrinum 3053191 Chordata Chordata 42.4 0.0224   NR XP_059506335.1 3053191 g14081 i0 51.1 2.48815165876777 47 22 65.4 1 203 66 127 173 XP_059506335.1 uncharacterized protein LOC125456831 isoform X1 [Stegostoma tigrinum] diamond 525 42.7 0.992974238875878 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Stegostomatidae Stegostoma Stegostoma tigrinum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;