RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA450632" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA450632 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19564991 19564991 PRJNA450632_P_NODE_13396_length_220_cov_2.027027_g13217_i0 PRJNA450632 13396 220 2.027027 4.4594594 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 114 1.21e-29   NR KAG6952591.1 29920 g13217 i0 66.7 1.96363636363636 72 24 98.2 0 3 218 22 93 KAG6952591.1 hypothetical protein JG687_00012914, partial [Phytophthora cactorum] diamond 432 115 0.991304347826087 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
28592078 28592078 PRJNA450632_P_NODE_22607_length_156_cov_1.198347_g22428_i0 PRJNA450632 22607 156 1.198347 1.86942132 Symbiodinium pilosum 2952 SAR_Eukaryotes SAR_Eukaryotes 76.3 1.7e-14   NR CAE7549696.1 2952 g22428 i0 66.7 0.923076923076923 48 16 92.3 0 8 151 543 590 CAE7549696.1 unnamed protein product [Symbiodinium pilosum] diamond 144 76.3 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Symbiodinium Symbiodinium pilosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;