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contig_metadata

17 rows where analysis = "diamond", bioproject = "PRJNA450343" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA450343 · 17 ✖

analysis 1

  • diamond · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4266100 4266100 PRJNA450343_P_NODE_7384_length_198_cov_1.711409_g7316_i0 PRJNA450343 7384 198 1.711409 3.38858982 Rhabditida 6236 Nematoda Nematoda 105 2.05e-26   NR VDK24207.1 6269 g7316 i0 73.8 18.7424242424242 65 17 98.5 0 196 2 109 173 VDK24207.1 unnamed protein product, partial [Anisakis simplex] diamond 3711 106 0.990566037735849 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
6816806 6816806 PRJNA450343_P_NODE_2786_length_324_cov_0.949091_g2718_i0 PRJNA450343 2786 324 0.949091 3.07505484 Rhabditida 6236 Nematoda Nematoda 134 7.3299999999999985e-34   NR VDO70396.1 6339 g2718 i0 67.6 10.9074074074074 108 35 100 0 324 1 1043 1150 VDO70396.1 unnamed protein product [Heligmosomoides polygyrus] diamond 3534 134 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
15120291 15120291 PRJNA450343_P_NODE_11212_length_166_cov_0.871795_g11144_i0 PRJNA450343 11212 166 0.871795 1.4471797 Toxocara canis 6265 Nematoda Nematoda 94 3.58e-21   NR KHN89029.1 6265 g11144 i0 83.6 2.98192771084337 55 9 99.4 0 2 166 249 303 KHN89029.1 Glyceraldehyde-3-phosphate dehydrogenase 3 [Toxocara canis] diamond 495 94 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
23391285 23391285 PRJNA450343_P_NODE_4419_length_253_cov_1.500000_g4351_i0 PRJNA450343 4419 253 1.5 3.795 Metazoa 33208 Nematoda Nematoda 75.1 9.78e-16   NR KRX72555.1 6337 g4351 i0 80 10.8853754940711 45 9 53.4 0 253 119 20 64 KRX72555.1 ADP,ATP carrier protein 3, mitochondrial [Trichinella pseudospiralis] diamond 2754 75.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis
27170704 27170704 PRJNA450343_P_NODE_3122_length_304_cov_2.180392_g3054_i0 PRJNA450343 3122 304 2.180392 6.62839168 Ancylostoma caninum 29170 Nematoda Nematoda 66.2 2.21e-10   NR RCN28425.1 29170 g3054 i0 45.6 2.64473684210526 90 34 76 5 234 4 29 116 RCN28425.1 shTK domain protein, partial [Ancylostoma caninum] diamond 804 66.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
27218499 27218499 PRJNA450343_P_NODE_10482_length_168_cov_1.285714_g10414_i0 PRJNA450343 10482 168 1.285714 2.15999952 Metastrongylidae 55271 Nematoda Nematoda 57.8 5.24e-8   NR KAE9418629.1 6313 g10414 i0 52.1 2.51785714285714 48 23 85.7 0 156 13 173 220 KAE9418629.1 hypothetical protein Angca_008814 [Angiostrongylus cantonensis] diamond 423 57.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus cantonensis
27218500 27218500 PRJNA450343_P_NODE_7722_length_194_cov_1.737931_g7654_i0 PRJNA450343 7722 194 1.737931 3.37158614 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 46.6 5.39e-4   NR MCP9266083.1 6287 g7654 i0 76.9 5.38144329896907 26 6 40.2 0 80 3 37 62 MCP9266083.1 Ubiquitin-conjugating enzyme E2-17 kDa [Dirofilaria immitis] diamond 1044 47 0.991489361702128 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
27471665 27471665 PRJNA450343_P_NODE_8443_length_187_cov_1.108696_g8375_i0 PRJNA450343 8443 187 1.108696 2.07326152 Metazoa 33208 Nematoda Nematoda 116 2.36e-30   NR EJW80512.1 6293 g8375 i0 88.5 23.4866310160428 61 7 97.9 0 3 185 22 82 EJW80512.1 T-complex protein 1 subunit beta [Wuchereria bancrofti] diamond 4392 117 0.991452991452991 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
27755974 27755974 PRJNA450343_P_NODE_11404_length_166_cov_0.871795_g11336_i0 PRJNA450343 11404 166 0.871795 1.4471797 Rhabditida 6236 Nematoda Nematoda 47.8 1.72e-4   NR XP_024500215.1 34506 g11336 i0 41.5 7.80722891566265 53 31 95.8 0 2 160 46 98 XP_024500215.1 GOLD domain-containing protein [Strongyloides ratti] diamond 1296 48.1 0.993762993762994 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
27881989 27881989 PRJNA450343_P_NODE_1825_length_408_cov_1.885794_g1757_i0 PRJNA450343 1825 408 1.885794 7.69403952 Rhabditida 6236 Nematoda Nematoda 52.4 9.78e-5   NR EFO97153.1 31234 g1757 i0 36.6 2.36029411764706 82 43 58.8 5 20 259 1042 1116 EFO97153.1 hypothetical protein CRE_30195 [Caenorhabditis remanei] diamond 963 52.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
28339390 28339390 PRJNA450343_P_NODE_4446_length_252_cov_1.980296_g4378_i0 PRJNA450343 4446 252 1.980296 4.99034592 Ancylostoma ceylanicum 53326 Nematoda Nematoda 59.3 5.83e-8   NR EYC13182.1 53326 g4378 i0 66.7 1.48809523809524 39 13 46.4 0 104 220 36 74 EYC13182.1 hypothetical protein Y032_0044g1017 [Ancylostoma ceylanicum] diamond 375 59.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum
29381328 29381328 PRJNA450343_P_NODE_8989_length_182_cov_1.150376_g8921_i0 PRJNA450343 8989 182 1.150376 2.09368432 Dirofilaria immitis 6287 Nematoda Nematoda 94.4 2.8400000000000003e-21   NR MCP9263221.1 6287 g8921 i0 78.3 4.94505494505495 60 13 98.9 0 181 2 41 100 MCP9263221.1 60S acidic ribosomal protein P0 [Dirofilaria immitis] diamond 900 94.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
31008619 31008619 PRJNA450343_P_NODE_5014_length_237_cov_1.079787_g4946_i0 PRJNA450343 5014 237 1.079787 2.55909519 Metazoa 33208 Nematoda Nematoda 93.6 3.15e-20   NR XP_024506889.1 34506 g4946 i0 59.5 24.4556962025316 74 30 93.7 0 230 9 372 445 XP_024506889.1 Alpha tubulin-like protein [Strongyloides ratti] diamond 5796 94 0.995744680851064 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
31134659 31134659 PRJNA450343_P_NODE_7455_length_198_cov_1.026846_g7387_i0 PRJNA450343 7455 198 1.026846 2.03315508 Metazoa 33208 Nematoda Nematoda 86.3 9.36e-18   NR KAH7726681.1 70226 g7387 i0 66.2 22.4090909090909 65 22 98.5 0 2 196 491 555 KAH7726681.1 heat shock protein HSP 90-beta [Aphelenchoides avenae] diamond 4437 86.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
31292958 31292958 PRJNA450343_P_NODE_12755_length_163_cov_0.894737_g12687_i0 PRJNA450343 12755 163 0.894737 1.45842131 Metazoa 33208 Nematoda Nematoda 44.7 0.00143   NR VDK79768.1 6269 g12687 i0 67.9 2.06134969325153 28 9 51.5 0 86 3 86 113 VDK79768.1 unnamed protein product, partial [Anisakis simplex] diamond 336 44.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
32747418 32747418 PRJNA450343_P_NODE_4900_length_240_cov_1.068063_g4832_i0 PRJNA450343 4900 240 1.068063 2.5633512 Opisthokonta 33154 Nematoda Nematoda 76.3 1.08e-14   NR GMS85744.1 358040 g4832 i0 43.1 3.55 72 41 90 0 216 1 109 180 GMS85744.1 hypothetical protein PENTCL1PPCAC_7919, partial [Pristionchus entomophagus] diamond 852 77 0.990909090909091 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus entomophagus
32904780 32904780 PRJNA450343_P_NODE_7020_length_203_cov_0.974026_g6952_i0 PRJNA450343 7020 203 0.974026 1.97727278 Opisthokonta 33154 Nematoda Nematoda 130 1.6e-34   NR UMM40069.1 6238 g6952 i0 97 575.039408866995 67 2 99 0 202 2 179 245 UMM40069.1 hypothetical protein L5515_016845 [Caenorhabditis briggsae] diamond 116733 131 0.99236641221374 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;