RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA450343" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA450343 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27928946 27928946 PRJNA450343_P_NODE_13385_length_162_cov_0.902655_g13317_i0 PRJNA450343 13385 162 0.902655 1.4623011 Gonapodya prolifera JEL478 1344416 Fungi Fungi 72 2.01e-13   NR KXS15864.1 1344416 g13317 i0 57.4 2 54 23 100 0 162 1 62 115 KXS15864.1 thioredoxin-like protein [Gonapodya prolifera JEL478] diamond 324 72 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales Gonapodyaceae Gonapodya Gonapodya prolifera
28560513 28560513 PRJNA450343_P_NODE_13827_length_161_cov_0.910714_g13759_i0 PRJNA450343 13827 161 0.910714 1.46624954 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 52.8 3.47e-6   NR KAH9259330.1 1357716 g13759 i0 59.1 0.819875776397516 44 18 82 0 9 140 269 312 KAH9259330.1 hypothetical protein BASA81_002373 [Batrachochytrium salamandrivorans] diamond 132 52.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
31166275 31166275 PRJNA450343_P_NODE_7695_length_195_cov_1.047945_g7627_i0 PRJNA450343 7695 195 1.047945 2.04349275 Fungi 4751 Fungi Fungi 102 8.509999999999998e-24   NR AAN35157.1 109881 g7627 i0 67.2 9.84615384615385 64 21 98.5 0 2 193 168 231 AAN35157.1 beta-tubulin, partial [Nowakowskiella elegans] diamond 1920 102 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella elegans
31593259 31593259 PRJNA450343_P_NODE_11376_length_166_cov_0.871795_g11308_i0 PRJNA450343 11376 166 0.871795 1.4471797 Chytridium lagenaria 64509 Fungi Fungi 45.4 0.00144   NR KAI8833209.1 64509 g11308 i0 43.1 1.8433734939759 51 29 92.2 0 161 9 237 287 KAI8833209.1 adaptin N terminal region-domain-containing protein [Chytridium lagenaria] diamond 306 45.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Chytridium Chytridium lagenaria
32321046 32321046 PRJNA450343_P_NODE_11879_length_165_cov_0.879310_g11811_i0 PRJNA450343 11879 165 0.87931 1.4508615 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 46.2 7.96e-4   NR KAH9258277.1 1357716 g11811 i0 45.8 0.872727272727273 48 26 87.3 0 153 10 521 568 KAH9258277.1 hypothetical protein BASA81_003326 [Batrachochytrium salamandrivorans] diamond 144 46.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;