RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA450343" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA450343 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28086663 28086663 PRJNA450343_P_NODE_13285_length_162_cov_0.902655_g13217_i0 PRJNA450343 13285 162 0.902655 1.4623011 Planctomycetota bacterium 2026780 Bacteria Bacteria 42.4 0.016   NR MDA0809678.1 2026780 g13217 i0 37.7 0.981481481481482 53 25 83.3 1 12 146 74 126 MDA0809678.1 hypothetical protein [Planctomycetota bacterium] diamond 159 42.4 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
28244466 28244466 PRJNA450343_P_NODE_5166_length_233_cov_2.407609_g5098_i0 PRJNA450343 5166 233 2.407609 5.60972897 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.1 0.0229   NR MBU6400767.1 2026799 g5098 i0 38.9 0.695278969957081 54 31 67 2 31 186 207 260 MBU6400767.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 162 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28339385 28339385 PRJNA450343_P_NODE_13146_length_162_cov_1.353982_g13078_i0 PRJNA450343 13146 162 1.353982 2.19345084 Planctomycetota bacterium 2026780 Bacteria Bacteria 41.6 0.032   NR MCC7510118.1 2026780 g13078 i0 35.6 0.833333333333333 45 29 83.3 0 158 24 1003 1047 MCC7510118.1 hypothetical protein [Planctomycetota bacterium] diamond 135 41.6 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
30676227 30676227 PRJNA450343_P_NODE_12573_length_164_cov_0.886957_g12505_i0 PRJNA450343 12573 164 0.886957 1.45460948 Prosthecobacter sp. 1965333 Bacteria Bacteria 46.2 7.65e-4   NR HEY1053134.1 1965333 g12505 i0 43.4 0.969512195121951 53 30 97 0 164 6 576 628 HEY1053134.1 ATP-dependent zinc metalloprotease FtsH [Prosthecobacter sp.] diamond 159 46.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;