RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA448207" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA448207 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27138866 27138866 PRJNA448207_P_NODE_23082_length_266_cov_1.823834_g22919_i0 PRJNA448207 23082 266 1.823834 4.85139844 Planctomycetota bacterium 2026780 Bacteria Bacteria 43.1 0.0341   NR MEM9881916.1 2026780 g22919 i0 47.2 0.597744360902256 53 26 57.5 1 45 197 37 89 MEM9881916.1 thiamine phosphate synthase [Planctomycetota bacterium] diamond 159 43.1 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
28655147 28655147 PRJNA448207_P_NODE_29787_length_245_cov_1.540698_g29624_i0 PRJNA448207 29787 245 1.540698 3.7747101 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 88.2 3.15e-18   NR MBX3351449.1 2026777 g29624 i0 82.4 0.624489795918367 51 9 62.4 0 2 154 401 451 MBX3351449.1 AI-2E family transporter [Phycisphaeraceae bacterium] diamond 153 88.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
30170714 30170714 PRJNA448207_P_NODE_32512_length_242_cov_0.911243_g32349_i0 PRJNA448207 32512 242 0.911243 2.20520806 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 41.2 0.0176   NR MBX3353608.1 2026777 g32349 i0 58.7 0.570247933884298 46 16 57 1 207 70 13 55 MBX3353608.1 hypothetical protein [Phycisphaeraceae bacterium] diamond 138 41.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
31798923 31798923 PRJNA448207_S_NODE_2457_length_290_cov_1.064516_g2446_i0 PRJNA448207 2457 290 1.064516 3.0870964 Bacteria 2 Bacteria Bacteria 137 9.72e-36   NR MBX3420633.1 2699754 g2446 i0 60.6 5.89655172413793 94 37 97.2 0 9 290 315 408 MBX3420633.1 glutamate synthase subunit beta [Pirellulaceae bacterium] diamond 1710 137 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae   Pirellulaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;