RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA448207" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA448207 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9366568 9366568 PRJNA448207_P_NODE_20268_length_286_cov_0.859155_g20105_i0 PRJNA448207 20268 286 0.859155 2.4571833 Staphylococcus warneri 1292 Bacteria Bacteria 126 2.3e-33   NR MDU6254963.1 1292 g20105 i0 85.5 1.59440559440559 76 11 79.7 0 228 1 147 222 MDU6254963.1 tyrosine-type recombinase/integrase [Staphylococcus warneri] diamond 456 126 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus warneri
30013000 30013000 PRJNA448207_P_NODE_25211_length_251_cov_1.544944_g25048_i0 PRJNA448207 25211 251 1.544944 3.87780944 Veillonella sp. 1926307 Bacteria Bacteria 135 4.59e-39   NR WP_366512514.1 1926307 g25048 i0 73.2 1.9601593625498 82 22 98 0 251 6 16 97 WP_366512514.1 hypothetical protein [Veillonella sp.] diamond 492 135 1 Bacteria   Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp.
32762662 32762662 PRJNA448207_P_NODE_30440_length_245_cov_0.889535_g30277_i0 PRJNA448207 30440 245 0.889535 2.17936075 Clostridium thermobutyricum 29372 Bacteria Bacteria 61.6 5.97e-10   NR ENZ01799.1 29372 g30277 i0 47.5 0.746938775510204 61 32 74.7 0 190 8 18 78 ENZ01799.1 30S ribosomal protein S15 [Clostridium thermobutyricum] diamond 183 61.6 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium thermobutyricum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;