RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA448207" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA448207 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27265781 27265781 PRJNA448207_P_NODE_15443_length_325_cov_0.873016_g15280_i0 PRJNA448207 15443 325 0.873016 2.837302 Acidobacteriota bacterium 1978231 Bacteria Bacteria 45.4 0.0106   NR MCB1007425.1 1978231 g15280 i0 40.8 0.655384615384615 71 42 65.5 0 269 57 345 415 MCB1007425.1 PD40 domain-containing protein [Acidobacteriota bacterium] diamond 213 45.4 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29570616 29570616 PRJNA448207_P_NODE_23030_length_267_cov_1.144330_g22867_i0 PRJNA448207 23030 267 1.14433 3.0553611 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 43.5 0.0232   NR HEY7445966.1 2910147 g22867 i0 36.2 0.775280898876405 69 43 77.5 1 59 265 132 199 HEY7445966.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Vicinamibacterales bacterium] diamond 207 43.5 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
30392460 30392460 PRJNA448207_P_NODE_13193_length_346_cov_5.142857_g13030_i0 PRJNA448207 13193 346 5.142857 17.79428522 Acidobacteriota bacterium 1978231 Bacteria Bacteria 45.4 0.0125   NR UCF81812.1 1978231 g13030 i0 40.3 0.580924855491329 67 34 58.1 2 58 258 185 245 UCF81812.1 MAG: AmmeMemoRadiSam system radical SAM enzyme [Acidobacteriota bacterium] diamond 201 45.4 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;