RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA446034" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA446034 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22114948 22114948 PRJNA446034_S_NODE_80438_length_164_cov_1.212598_g80401_i0 PRJNA446034 80438 164 1.212598 1.98866072 Pseudomonadati 3379134 Bacteria Bacteria 86.3 4.5e-18   NR MDH5655977.1 2053615 g80401 i0 72.2 1.97560975609756 54 15 98.8 0 164 3 120 173 MDH5655977.1 ABC transporter ATP-binding protein [Spirochaetia bacterium] diamond 324 86.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
27771189 27771189 PRJNA446034_S_NODE_2804_length_350_cov_3.827476_g2767_i0 PRJNA446034 2804 350 3.827476 13.396166 Leptospiraceae bacterium 2026757 Bacteria Bacteria 81.3 3.38e-15   NR HMW08653.1 2026757 g2767 i0 60.3 0.54 63 25 54 0 6 194 371 433 HMW08653.1 AAA family ATPase [Leptospiraceae bacterium] diamond 189 81.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium
28150017 28150017 PRJNA446034_S_NODE_2845_length_349_cov_3.118590_g2808_i0 PRJNA446034 2845 349 3.11859 10.8838791 Spirochaetota bacterium 2202144 Bacteria Bacteria 57.4 8.67e-7   NR TXG81161.1 2202144 g2808 i0 34 1.4269340974212 94 58 80.8 2 321 40 324 413 TXG81161.1 MAG: hypothetical protein E6R13_06770 [Spirochaetota bacterium] diamond 498 57.4 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
28655113 28655113 PRJNA446034_S_NODE_36107_length_198_cov_1.993789_g36070_i0 PRJNA446034 36107 198 1.993789 3.94770222 Treponema sp. OMZ 788 2563664 Bacteria Bacteria 66.6 7.66e-11   NR WP_253678132.1 2563664 g36070 i0 48.4 0.96969696969697 64 33 97 0 3 194 232 295 WP_253678132.1 hypothetical protein [Treponema sp. OMZ 788] diamond 192 66.6 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 788
28844317 28844317 PRJNA446034_S_NODE_110788_length_151_cov_6.210526_g110751_i0 PRJNA446034 110788 151 6.210526 9.37789426 Spirochaetota bacterium 2202144 Bacteria Bacteria 42.7 0.0103   NR TXG83738.1 2202144 g110751 i0 43.8 0.95364238410596 48 25 95.4 1 3 146 329 374 TXG83738.1 MAG: hypothetical protein E6R13_03695 [Spirochaetota bacterium] diamond 144 42.7 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
29665048 29665048 PRJNA446034_S_NODE_21130_length_223_cov_1.763441_g21093_i0 PRJNA446034 21130 223 1.763441 3.93247343 Leptospira wolffii 409998 Bacteria Bacteria 136 2.32e-36   NR WP_135599063.1 409998 g21093 i0 90.4 1.96412556053812 73 7 98.2 0 3 221 361 433 WP_135599063.1 LptA/OstA family protein [Leptospira wolffii] diamond 438 136 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira wolffii
31687849 31687849 PRJNA446034_S_NODE_13537_length_245_cov_11.230769_g13500_i0 PRJNA446034 13537 245 11.230769 27.51538405 Spirochaetota bacterium 2202144 Bacteria Bacteria 69.7 1.94e-12   NR TXG81160.1 2202144 g13500 i0 43 0.96734693877551 79 44 96.7 1 6 242 58 135 TXG81160.1 MAG: hypothetical protein E6R13_06765 [Spirochaetota bacterium] diamond 237 69.7 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
32225915 32225915 PRJNA446034_S_NODE_67318_length_171_cov_2.559701_g67281_i0 PRJNA446034 67318 171 2.559701 4.37708871 Leptospira hartskeerlii 2023177 Bacteria Bacteria 100 4.5899999999999996e-23   NR WP_100706737.1 2023177 g67281 i0 87.3 0.964912280701754 55 7 96.5 0 5 169 206 260 WP_100706737.1 adenylate/guanylate cyclase domain-containing protein [Leptospira hartskeerlii] diamond 165 100 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira hartskeerlii
32731278 32731278 PRJNA446034_S_NODE_17200_length_233_cov_2.750000_g17163_i0 PRJNA446034 17200 233 2.75 6.4075 Leptospira licerasiae 447106 Bacteria Bacteria 153 1.6699999999999999e-43   NR WP_008591174.1 447106 g17163 i0 100 0.939914163090129 73 0 94 0 3 221 91 163 WP_008591174.1 hypothetical protein [Leptospira licerasiae] diamond 219 153 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira licerasiae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;