RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA446034" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA446034 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27076019 27076019 PRJNA446034_S_NODE_49062_length_184_cov_4.374150_g49025_i0 PRJNA446034 49062 184 4.37415 8.048436 Spiroplasma sp. SV19 2570468 Bacteria Bacteria 49.3 7.44e-5   NR WP_283272510.1 2570468 g49025 i0 40.4 2.78804347826087 57 32 92.9 1 11 181 162 216 WP_283272510.1 DNA adenine methylase [Spiroplasma sp. SV19] diamond 513 49.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma sp. SV19
29886627 29886627 PRJNA446034_S_NODE_23271_length_218_cov_3.734807_g23234_i0 PRJNA446034 23271 218 3.734807 8.14187926 Mycoplasmopsis lipofaciens 114884 Bacteria Bacteria 89.4 6.88e-19   NR WP_027120500.1 114884 g23234 i0 59.7 2.95871559633028 72 29 99.1 0 217 2 71 142 WP_027120500.1 hypothetical protein [Mycoplasmopsis lipofaciens] diamond 645 89.4 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis lipofaciens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;