RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA446034" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA446034 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20840101 20840101 PRJNA446034_S_NODE_99537_length_155_cov_5.652542_g99500_i0 PRJNA446034 99537 155 5.652542 8.7614401 Vaucheria litorea 109269 SAR_Eukaryotes SAR_Eukaryotes 101 2.5699999999999998e-23   NR YP_002327489.1 109269 g99500 i0 92.2 0.987096774193548 51 4 98.7 0 155 3 34 84 YP_002327489.1 acetohydroxyacid synthase large subunit [Vaucheria litorea] diamond 153 101 1 Eukaryota Sar     Xanthophyceae Vaucheriales Vaucheriaceae Vaucheria Vaucheria litorea
27123605 27123605 PRJNA446034_S_NODE_61322_length_175_cov_1.956522_g61285_i0 PRJNA446034 61322 175 1.956522 3.4239135 root 1 Root_unresolved Root_unresolved 43.1 0.00985   NR CAD7957206.1 2202890 g61285 i0 48.3 2.52 29 15 49.7 0 124 38 89 117 CAD7957206.1 unnamed protein product [Amoebophrya sp. A120] diamond 441 43.5 0.990804597701149 Eukaryota Sar     Dinophyceae Syndiniales Amoebophryaceae Amoebophrya Amoebophrya sp. A120
28055048 28055048 PRJNA446034_S_NODE_8385_length_273_cov_3.466102_g8348_i0 PRJNA446034 8385 273 3.466102 9.46245846 Fistulifera solaris 1519565 SAR_Eukaryotes SAR_Eukaryotes 119 2.45e-29   NR GAX23430.1 1519565 g8348 i0 89.6 0.736263736263736 67 7 73.6 0 3 203 463 529 GAX23430.1 aspartate kinase [Fistulifera solaris] diamond 201 119 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Fistulifera Fistulifera solaris
32668110 32668110 PRJNA446034_S_NODE_11540_length_254_cov_4.645161_g11503_i0 PRJNA446034 11540 254 4.645161 11.79870894 Vaucheria litorea 109269 SAR_Eukaryotes SAR_Eukaryotes 66.6 9.27e-12   NR YP_002327482.1 109269 g11503 i0 45.1 3.35433070866142 71 39 83.9 0 8 220 58 128 YP_002327482.1 hypothetical protein RF19 [Vaucheria litorea] diamond 852 66.6 1 Eukaryota Sar     Xanthophyceae Vaucheriales Vaucheriaceae Vaucheria Vaucheria litorea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;