RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA438687" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA438687 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26949355 26949355 PRJNA438687_S_NODE_4442_length_211_cov_1.136364_g4352_i0 PRJNA438687 4442 211 1.136364 2.39772804 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 117 4.589999999999999e-31   NR CDW89587.1 5949 g4352 i0 94.1 0.966824644549763 68 4 96.7 0 205 2 1 68 CDW89587.1 UNKNOWN [Stylonychia lemnae] diamond 204 117 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
26981040 26981040 PRJNA438687_S_NODE_3302_length_245_cov_5.704762_g3212_i0 PRJNA438687 3302 245 5.704762 13.9766669 Tetrahymena malaccensis 5901 SAR_Eukaryotes SAR_Eukaryotes 55.1 1.77e-6   NR KAL4506331.1 5901 g3212 i0 35 0.979591836734694 80 39 91.8 3 19 243 1089 1160 KAL4506331.1 hypothetical protein ABPG73_017065 [Tetrahymena malaccensis] diamond 240 55.1 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
31988839 31988839 PRJNA438687_S_NODE_6338_length_174_cov_1.935252_g6248_i0 PRJNA438687 6338 174 1.935252 3.36733848 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 97.8 6.74e-24   NR AAD00995.1 60850 g6248 i0 84.2 1.96551724137931 57 9 98.3 0 172 2 113 169 AAD00995.1 spasmin [Vorticella convallaria] diamond 342 97.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella convallaria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;