RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA438687" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA438687 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27549840 27549840 PRJNA438687_S_NODE_5824_length_183_cov_1.810811_g5734_i0 PRJNA438687 5824 183 1.810811 3.31378413 Helicobacter pylori 210 Bacteria Bacteria 39.3 0.037   NR GAA6796013.1 210 g5734 i0 100 0.278688524590164 17 0 27.9 0 181 131 4 20 GAA6796013.1 hypothetical protein Kyoto200A_0760 [Helicobacter pylori] diamond 51 39.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32888444 32888444 PRJNA438687_S_NODE_6000_length_179_cov_5.638889_g5910_i0 PRJNA438687 6000 179 5.638889 10.09361131 Helicobacter pylori 210 Bacteria Bacteria 48.9 4.93e-5   NR GAA9037156.1 210 g5910 i0 85.4 0.804469273743017 48 3 73.7 1 155 24 1 48 GAA9037156.1 hypothetical protein Kyoto184A_00230 [Helicobacter pylori] diamond 144 48.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;