RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA438687" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA438687 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4262348 4262348 PRJNA438687_S_NODE_5644_length_186_cov_1.841060_g5554_i0 PRJNA438687 5644 186 1.84106 3.4243716 Bacteroidota bacterium 1898104 Bacteria Bacteria 111 1.13e-30   NR MEO0041226.1 1898104 g5554 i0 98.2 0.887096774193548 55 1 88.7 0 20 184 1 55 MEO0041226.1 hypothetical protein [Bacteroidota bacterium] diamond 165 111 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
29871200 29871200 PRJNA438687_S_NODE_7771_length_155_cov_1.850000_g7681_i0 PRJNA438687 7771 155 1.85 2.8675 Prevotella 838 Bacteria Bacteria 92.8 1.14e-20   NR MES5169168.1 28132 g7681 i0 86.3 3.94838709677419 51 7 98.7 0 2 154 102 152 MES5169168.1 ISL3 family transposase [Prevotella melaninogenica] diamond 612 92.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella melaninogenica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;