RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA438687" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA438687 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27739738 27739738 PRJNA438687_S_NODE_6984_length_165_cov_1.207692_g6894_i0 PRJNA438687 6984 165 1.207692 1.9926918 Streptomyces griseocarneus 51201 Bacteria Bacteria 47.4 3.04e-5   NR RLU73987.1 51201 g6894 i0 68.8 0.581818181818182 32 10 58.2 0 6 101 9 40 RLU73987.1 hypothetical protein CTZ27_38935 [Streptomyces griseocarneus] diamond 96 47.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces griseocarneus
30676149 30676149 PRJNA438687_S_NODE_7693_length_156_cov_1.413223_g7603_i0 PRJNA438687 7693 156 1.413223 2.20462788 Lawsonella 1847725 Bacteria Bacteria 105 5.75e-26   NR WP_290598832.1 1847725 g7603 i0 100 1.96153846153846 51 0 98.1 0 2 154 28 78 WP_290598832.1 MULTISPECIES: type 1 glutamine amidotransferase [Lawsonella] diamond 306 105 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella  
31814413 31814413 PRJNA438687_S_NODE_5417_length_190_cov_1.322581_g5327_i0 PRJNA438687 5417 190 1.322581 2.5129039 Plantibacter sp. T3 2653161 Bacteria Bacteria 42 0.0243   NR VXB22941.1 2653161 g5327 i0 58.5 0.647368421052632 41 15 64.7 1 53 175 53 91 VXB22941.1 hypothetical protein PLANTIT3_30042 [Plantibacter sp. T3] diamond 123 42 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Plantibacter Plantibacter sp. T3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;