RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA438687" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA438687 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27265748 27265748 PRJNA438687_S_NODE_4943_length_200_cov_0.939394_g4853_i0 PRJNA438687 4943 200 0.939394 1.878788 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 63.2 2.6e-10   NR MCE5327520.1 2026779 g4853 i0 50.9 1.725 57 25 81 1 36 197 45 101 MCE5327520.1 hypothetical protein [Planctomycetaceae bacterium] diamond 345 63.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium
29208272 29208272 PRJNA438687_S_NODE_8149_length_151_cov_1.327586_g8059_i0 PRJNA438687 8149 151 1.327586 2.00465486 Thermogutta 1676125 Bacteria Bacteria 53.5 1.63e-6   NR ASV76041.1 1331910 g8059 i0 62.8 1.72847682119205 43 16 85.4 0 145 17 87 129 ASV76041.1 hypothetical protein THTE_3439 [Thermogutta terrifontis] diamond 261 53.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Thermoguttaceae Thermogutta Thermogutta terrifontis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;