RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA438572" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA438572 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27771168 27771168 PRJNA438572_P_NODE_21784_length_246_cov_0.901734_g21665_i0 PRJNA438572 21784 246 0.901734 2.21826564 Perkinsus olseni 32597 SAR_Eukaryotes SAR_Eukaryotes 81.6 7.41e-16   NR KAF4733279.1 32597 g21665 i0 49.4 2.02439024390244 83 38 96.3 1 3 239 317 399 KAF4733279.1 mRNA-binding ribosome synthesis protein [Perkinsus olseni] diamond 498 81.6 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
29902878 29902878 PRJNA438572_P_NODE_2411_length_630_cov_2.355476_g2295_i0 PRJNA438572 2411 630 2.355476 14.8394988 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 204 2.26e-57   NR KAF4665470.1 32597 g2295 i0 64.8 60.0047619047619 162 55 77.1 1 145 630 36 195 KAF4665470.1 40S ribosomal protein [Perkinsus olseni] diamond 37803 206 0.990291262135922 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;