RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA438572" and tax_phylum = "Nitrososphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA438572 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2366478 2366478 PRJNA438572_P_NODE_21302_length_246_cov_1.780347_g21183_i0 PRJNA438572 21302 246 1.780347 4.37965362 root 1 Root_unresolved Root_unresolved 73.2 7.49e-13   NR MDA4120811.1 2026795 g21183 i0 44.7 2.70731707317073 76 41 91.5 1 10 234 507 582 MDA4120811.1 ATP-dependent DNA ligase [Nitrososphaerota archaeon] diamond 666 73.6 0.994565217391304 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
32621405 32621405 PRJNA438572_P_NODE_24360_length_242_cov_0.923077_g24241_i0 PRJNA438572 24360 242 0.923077 2.23384634 root 1 Root_unresolved Root_unresolved 74.7 1.97e-13   NR MBM3910197.1 2026795 g24241 i0 44.9 4.68595041322314 78 41 95.5 2 234 4 29 105 MBM3910197.1 FAD-dependent oxidoreductase [Nitrososphaerota archaeon] diamond 1134 74.7 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;