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contig_metadata

29 rows where analysis = "diamond", bioproject = "PRJNA438572" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 29 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA438572 · 29 ✖

analysis 1

  • diamond · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
434933 434933 PRJNA438572_P_NODE_16321_length_257_cov_1.217391_g16202_i0 PRJNA438572 16321 257 1.217391 3.12869487 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 62 1.9e-9   NR KAE9549234.1 2598192 g16202 i0 46.6 1.70428015564202 73 39 85.2 0 39 257 56 128 KAE9549234.1 hypothetical protein FO519_007559 [Halicephalobus sp. NKZ332] diamond 438 62 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
1710029 1710029 PRJNA438572_P_NODE_622_length_1116_cov_3.138063_g562_i0 PRJNA438572 622 1116 3.138063 35.02078308 Meloidogyne graminicola 189291 Nematoda Nematoda 113 8.759999999999999e-25   NR AVZ46778.1 189291 g562 i0 51.5 0.349462365591398 130 62 34.7 1 766 380 117 246 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 390 113 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
6812948 6812948 PRJNA438572_P_NODE_6606_length_390_cov_2.094637_g6487_i0 PRJNA438572 6606 390 2.094637 8.1690843 Auanema sp. JU1783 2878363 Nematoda Nematoda 75.1 1.1e-13   NR CAI4222289.1 2878363 g6487 i0 39.6 1.69230769230769 106 54 81.5 2 339 22 1 96 CAI4222289.1 unnamed protein product [Auanema sp. JU1783] diamond 660 75.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
11913914 11913914 PRJNA438572_P_NODE_6170_length_403_cov_2.466667_g6051_i0 PRJNA438572 6170 403 2.466667 9.94066801 Caenorhabditis brenneri 135651 Nematoda Nematoda 108 3.2600000000000004e-27   NR EGT34536.1 135651 g6051 i0 57 2.07692307692308 93 40 69.2 0 280 2 40 132 EGT34536.1 hypothetical protein CAEBREN_26317 [Caenorhabditis brenneri] diamond 837 109 0.990825688073395 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri
12569837 12569837 PRJNA438572_P_NODE_18110_length_251_cov_0.876404_g17991_i0 PRJNA438572 18110 251 0.876404 2.19977404 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 75.1 1.72e-13   NR VDM51785.1 334426 g17991 i0 55.4 8.0199203187251 65 29 77.7 0 3 197 5875 5939 VDM51785.1 unnamed protein product [Angiostrongylus costaricensis] diamond 2013 75.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus costaricensis
22111638 22111638 PRJNA438572_P_NODE_19558_length_249_cov_0.886364_g19439_i0 PRJNA438572 19558 249 0.886364 2.20704636 Onchocercidae 6296 Nematoda Nematoda 138 8.52e-38   NR VBB32394.1 6277 g19439 i0 73.5 13.9879518072289 83 22 100 0 249 1 189 271 VBB32394.1 unnamed protein product [Acanthocheilonema viteae] diamond 3483 138 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
22111836 22111836 PRJNA438572_P_NODE_8178_length_356_cov_1.063604_g8059_i0 PRJNA438572 8178 356 1.063604 3.78643024 Rhabditida 6236 Nematoda Nematoda 148 4.749999999999999e-40   NR XP_064044047.1 51031 g8059 i0 59.5 9.84269662921348 116 47 97.8 0 1 348 145 260 XP_064044047.1 hypothetical protein RB195_020037 [Necator americanus] diamond 3504 148 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
24042923 24042923 PRJNA438572_P_NODE_5519_length_425_cov_1.707386_g5400_i0 PRJNA438572 5519 425 1.707386 7.2563905 Metazoa 33208 Nematoda Nematoda 204 2.45e-62   NR VDD92992.1 51028 g5400 i0 76 8.18117647058824 129 31 91.1 0 17 403 1 129 VDD92992.1 unnamed protein product [Enterobius vermicularis] diamond 3477 204 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis
27345363 27345363 PRJNA438572_P_NODE_6083_length_406_cov_1.405405_g5964_i0 PRJNA438572 6083 406 1.405405 5.7059443 Nematoda 6231 Nematoda Nematoda 182 2.4699999999999997e-56   NR CAD5208001.1 6326 g5964 i0 67.4 3.82758620689655 129 42 95.3 0 13 399 1 129 CAD5208001.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 1554 182 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
27455404 27455404 PRJNA438572_P_NODE_12043_length_296_cov_1.399103_g11924_i0 PRJNA438572 12043 296 1.399103 4.14134488 Meloidogyne graminicola 189291 Nematoda Nematoda 66.6 1.68e-10   NR AVZ46778.1 189291 g11924 i0 50.7 0.719594594594595 71 35 72 0 214 2 117 187 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 213 66.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
27534700 27534700 PRJNA438572_P_NODE_7743_length_365_cov_1.013699_g7624_i0 PRJNA438572 7743 365 1.013699 3.70000135 Trichinella 6333 Nematoda Nematoda 48.1 0.00174   NR OUC45829.1 6335 g7624 i0 46.2 1.28219178082192 52 27 41.9 1 354 202 367 418 OUC45829.1 Isy1-like splicing family protein [Trichinella nativa] diamond 468 48.5 0.991752577319588 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nativa
27613240 27613240 PRJNA438572_P_NODE_11684_length_301_cov_1.026316_g11565_i0 PRJNA438572 11684 301 1.026316 3.08921116 Auanema sp. JU1783 2878363 Nematoda Nematoda 108 7.72e-25   NR CAI4224265.1 2878363 g11565 i0 52.9 2.03322259136213 102 45 99.7 2 300 1 431 531 CAI4224265.1 unnamed protein product [Auanema sp. JU1783] diamond 612 108 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
27850238 27850238 PRJNA438572_P_NODE_16264_length_257_cov_1.679348_g16145_i0 PRJNA438572 16264 257 1.679348 4.31592436 Rhabditida 6236 Nematoda Nematoda 82.4 4.77e-16   NR KHN74662.1 6265 g16145 i0 53.4 6.7704280155642 73 34 85.2 0 219 1 413 485 KHN74662.1 Mitochondrial-processing peptidase subunit alpha [Toxocara canis] diamond 1740 82.8 0.995169082125604 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
27992109 27992109 PRJNA438572_P_NODE_925_length_949_cov_3.480594_g845_i0 PRJNA438572 925 949 3.480594 33.03083706 Meloidogyne graminicola 189291 Nematoda Nematoda 61.6 8.61e-7   NR AVZ46778.1 189291 g845 i0 33.1 0.410958904109589 130 87 41.1 0 521 132 117 246 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 390 61.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
28102854 28102854 PRJNA438572_P_NODE_7105_length_378_cov_2.475410_g6986_i0 PRJNA438572 7105 378 2.47541 9.3570498 Opisthokonta 33154 Nematoda Nematoda 53.1 1.09e-5   NR KAH7728422.1 70226 g6986 i0 38.6 1.6031746031746 70 35 54 2 356 153 100 163 KAH7728422.1 Vitellogenin-linked Transcript family member [Aphelenchoides avenae] diamond 606 53.5 0.992523364485981 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
28703010 28703010 PRJNA438572_P_NODE_14967_length_269_cov_1.193878_g14848_i0 PRJNA438572 14967 269 1.193878 3.21153182 Metazoa 33208 Nematoda Nematoda 59.3 7.46e-8   NR XP_045092065.1 6238 g14848 i0 36.8 6.04460966542751 95 53 98.1 1 265 2 261 355 XP_045092065.1 Protein CBR-PAB-1 [Caenorhabditis briggsae] diamond 1626 59.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
29712879 29712879 PRJNA438572_P_NODE_19030_length_250_cov_0.881356_g18911_i0 PRJNA438572 19030 250 0.881356 2.20339 Metazoa 33208 Nematoda Nematoda 105 4.5599999999999996e-24   NR VDL74797.1 27835 g18911 i0 62.2 9.768 82 30 98.4 1 3 248 682 762 VDL74797.1 unnamed protein product [Nippostrongylus brasiliensis] diamond 2442 105 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Nippostrongylus Nippostrongylus brasiliensis
30075888 30075888 PRJNA438572_P_NODE_6272_length_400_cov_5.862385_g6153_i0 PRJNA438572 6272 400 5.862385 23.44954 Pristionchus fissidentatus 1538716 Nematoda Nematoda 87.8 2.5e-19   NR GMT18625.1 1538716 g6153 i0 41.2 0.9825 131 71 97.5 3 6 395 1 126 GMT18625.1 hypothetical protein PFISCL1PPCAC_9922 [Pristionchus fissidentatus] diamond 393 87.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
30345601 30345601 PRJNA438572_P_NODE_2652_length_601_cov_1.625000_g2536_i0 PRJNA438572 2652 601 1.625 9.76625 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 241 6.56e-75   NR CAJ0575485.1 96644 g2536 i0 55.3 36.5590682196339 197 88 98.3 0 3 593 160 356 CAJ0575485.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 21972 241 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
30565897 30565897 PRJNA438572_P_NODE_15433_length_265_cov_1.218750_g15314_i0 PRJNA438572 15433 265 1.21875 3.2296875 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 149 4.8099999999999985e-43   NR VBB31859.1 6277 g15314 i0 82.8 152.660377358491 87 15 98.5 0 263 3 94 180 VBB31859.1 unnamed protein product [Acanthocheilonema viteae] diamond 40455 150 0.993333333333333 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
30945501 30945501 PRJNA438572_P_NODE_5734_length_418_cov_1.205797_g5615_i0 PRJNA438572 5734 418 1.205797 5.04023146 Metazoa 33208 Nematoda Nematoda 92.4 3.76e-19   NR KAK6028514.1 6317 g5615 i0 46.7 2.75598086124402 107 47 76.8 2 325 5 41 137 KAK6028514.1 papain family cysteine protease [Ostertagia ostertagi] diamond 1152 93.2 0.991416309012876 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi
31055774 31055774 PRJNA438572_P_NODE_22015_length_245_cov_0.906977_g21896_i0 PRJNA438572 22015 245 0.906977 2.22209365 Heterodera trifolii 157864 Nematoda Nematoda 78.2 1.27e-14   NR KAL3120973.1 157864 g21896 i0 68.6 1.32244897959184 51 16 62.4 0 154 2 363 413 KAL3120973.1 hypothetical protein niasHT_002601 [Heterodera trifolii] diamond 324 78.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
31087067 31087067 PRJNA438572_P_NODE_5395_length_429_cov_1.314607_g5276_i0 PRJNA438572 5395 429 1.314607 5.63966403 Diploscapter pachys 2018661 Nematoda Nematoda 87.8 4.09e-19   NR PAV69430.1 2018661 g5276 i0 38.3 0.804195804195804 115 71 80.4 0 401 57 11 125 PAV69430.1 hypothetical protein WR25_09036 [Diploscapter pachys] diamond 345 87.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
31609358 31609358 PRJNA438572_P_NODE_22876_length_244_cov_0.912281_g22757_i0 PRJNA438572 22876 244 0.912281 2.22596564 Rhabditida 6236 Nematoda Nematoda 111 2.9300000000000003e-26   NR KAJ1374590.1 148309 g22757 i0 60.5 1.99180327868852 81 32 99.6 0 1 243 266 346 KAJ1374590.1 hypothetical protein KIN20_037302 [Parelaphostrongylus tenuis] diamond 486 111 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Parelaphostrongylus Parelaphostrongylus tenuis
31719519 31719519 PRJNA438572_P_NODE_14857_length_270_cov_1.187817_g14738_i0 PRJNA438572 14857 270 1.187817 3.2071059 Caenorhabditis elegans 6239 Nematoda Nematoda 109 1.95e-26   NR NP_001369965.1 6239 g14738 i0 57.8 2.01111111111111 90 37 98.9 1 267 1 192 281 NP_001369965.1 Peptidase C1A papain C-terminal domain-containing protein [Caenorhabditis elegans] diamond 543 109 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
31719528 31719528 PRJNA438572_P_NODE_23537_length_243_cov_0.917647_g23418_i0 PRJNA438572 23537 243 0.917647 2.22988221 Pristionchus pacificus 54126 Nematoda Nematoda 66.6 1.25e-10   NR KAF8367605.1 54126 g23418 i0 50.8 0.777777777777778 63 31 77.8 0 189 1 1 63 KAF8367605.1 idha-1 [Pristionchus pacificus] diamond 189 66.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
31814403 31814403 PRJNA438572_P_NODE_3517_length_525_cov_2.938053_g3399_i0 PRJNA438572 3517 525 2.938053 15.42477825 Soboliphyme baturini 241478 Nematoda Nematoda 242 1.21e-75   NR VDP03056.1 241478 g3399 i0 65.5 0.942857142857143 165 57 94.3 0 1 495 55 219 VDP03056.1 unnamed protein product [Soboliphyme baturini] diamond 495 242 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
32510782 32510782 PRJNA438572_P_NODE_22739_length_244_cov_0.912281_g22620_i0 PRJNA438572 22739 244 0.912281 2.22596564 Bursaphelenchus okinawaensis 465554 Nematoda Nematoda 102 1.86e-23   NR CAD5224787.1 465554 g22620 i0 60 0.983606557377049 80 32 98.4 0 2 241 183 262 CAD5224787.1 unnamed protein product [Bursaphelenchus okinawaensis] diamond 240 102 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus okinawaensis
32762595 32762595 PRJNA438572_P_NODE_15800_length_261_cov_2.074468_g15681_i0 PRJNA438572 15800 261 2.074468 5.41436148 Gnathostoma spinigerum 75299 Nematoda Nematoda 79 2.94e-16   NR MFH4982983.1 75299 g15681 i0 52.9 4.3448275862069 85 40 97.7 0 257 3 1 85 MFH4982983.1 hypothetical protein [Gnathostoma spinigerum] diamond 1134 79 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;