RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA438111" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA438111 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26695987 26695987 PRJNA438111_P_NODE_4961_length_443_cov_2.512077_g4400_i0 PRJNA438111 4961 443 2.512077 11.12850111 Candidatus Ureaplasma intestinipullorum 2838770 Bacteria Bacteria 102 3.4000000000000003e-22   NR MBU3830685.1 2838770 g4400 i0 39.7 0.954853273137698 141 85 95.5 0 8 430 290 430 MBU3830685.1 AAA family ATPase [Candidatus Ureaplasma intestinipullorum] diamond 423 102 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Ureaplasma Candidatus Ureaplasma intestinipullorum
29444100 29444100 PRJNA438111_P_NODE_54850_length_176_cov_5.102041_g54225_i0 PRJNA438111 54850 176 5.102041 8.97959216 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 103 4.54e-25   NR NLM32254.1 1898209 g54225 i0 100 0.988636363636364 58 0 98.9 0 1 174 41 98 NLM32254.1 YihY/virulence factor BrkB family protein [Acholeplasmataceae bacterium] diamond 174 103 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
32099078 32099078 PRJNA438111_P_NODE_84258_length_154_cov_7.592000_g83633_i0 PRJNA438111 84258 154 7.592 11.69168 Mycoplasmoides pneumoniae 2104 Bacteria Bacteria 74.3 8.08e-14   NR WP_010875028.1 2104 g83633 i0 79.2 1.94805194805195 48 10 93.5 0 150 7 545 592 WP_010875028.1 ATP-dependent zinc metalloprotease FtsH [Mycoplasmoides pneumoniae] diamond 300 74.3 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Mycoplasmoides Mycoplasmoides pneumoniae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;