RNAquarium Metadata Server
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contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA438111" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA438111 · 13 ✖

analysis 1

  • diamond · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17668051 17668051 PRJNA438111_P_NODE_1414_length_793_cov_5.763089_g1081_i0 PRJNA438111 1414 793 5.763089 45.70129577 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 269 2.05e-83   NR CEO95344.1 37360 g1081 i0 61.6 36.1853720050441 211 77 79.8 1 160 792 142 348 CEO95344.1 hypothetical protein PBRA_004110 [Plasmodiophora brassicae] diamond 28695 269 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
22110484 22110484 PRJNA438111_P_NODE_2038_length_674_cov_8.274419_g1633_i0 PRJNA438111 2038 674 8.274419 55.76958406 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 295 6.69e-97   NR CEO94341.1 37360 g1633 i0 67.2 59.3857566765579 201 66 89.5 0 672 70 106 306 CEO94341.1 hypothetical protein PBRA_000126 [Plasmodiophora brassicae] diamond 40026 295 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
23386000 23386000 PRJNA438111_P_NODE_1559_length_757_cov_13.550824_g1204_i0 PRJNA438111 1559 757 13.550824 102.57973768 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 370 5.53e-124   NR CEP00050.1 37360 g1204 i0 69.6 26.9405548216645 250 76 99.1 0 3 752 204 453 CEP00050.1 hypothetical protein PBRA_007784 [Plasmodiophora brassicae] diamond 20394 370 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27865506 27865506 PRJNA438111_P_NODE_68645_length_165_cov_3.617647_g68020_i0 PRJNA438111 68645 165 3.617647 5.96911755 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 62.4 1.11e-9   NR SPQ98398.1 37360 g68020 i0 48.1 0.981818181818182 54 28 98.2 0 163 2 76 129 SPQ98398.1 unnamed protein product [Plasmodiophora brassicae] diamond 162 62.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29160407 29160407 PRJNA438111_P_NODE_4229_length_479_cov_10.017778_g1204_i3 PRJNA438111 4229 479 10.017778 47.98515662 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 184 7.02e-53   NR CEP00050.1 37360 g1204 i3 70.3 1.47807933194154 118 35 73.9 0 3 356 336 453 CEP00050.1 hypothetical protein PBRA_007784 [Plasmodiophora brassicae] diamond 708 184 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29334372 29334372 PRJNA438111_P_NODE_22969_length_225_cov_5.397959_g22344_i0 PRJNA438111 22969 225 5.397959 12.14540775 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 99.8 2.69e-22   NR SPQ93586.1 37360 g22344 i0 60 2 75 30 100 0 1 225 3672 3746 SPQ93586.1 unnamed protein product [Plasmodiophora brassicae] diamond 450 99.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29381196 29381196 PRJNA438111_P_NODE_56069_length_175_cov_3.404110_g55444_i0 PRJNA438111 56069 175 3.40411 5.9571925 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 61.2 4.32e-9   NR SPR01160.1 37360 g55444 i0 51.8 0.96 56 27 96 0 3 170 174 229 SPR01160.1 unnamed protein product [Plasmodiophora brassicae] diamond 168 61.2 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29886532 29886532 PRJNA438111_P_NODE_3211_length_544_cov_9.883495_g1204_i2 PRJNA438111 3211 544 9.883495 53.7662128 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 183 2.18e-52   NR CEP00050.1 37360 g1204 i2 70.3 1.30147058823529 118 35 65.1 0 3 356 336 453 CEP00050.1 hypothetical protein PBRA_007784 [Plasmodiophora brassicae] diamond 708 183 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30075791 30075791 PRJNA438111_P_NODE_10192_length_320_cov_5.951890_g9571_i0 PRJNA438111 10192 320 5.95189 19.046048 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 169 5.619999999999999e-52   NR CEP03336.1 37360 g9571 i0 81.2 0.946875 101 19 94.7 0 304 2 11 111 CEP03336.1 hypothetical protein PBRA_003096 [Plasmodiophora brassicae] diamond 303 169 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30265839 30265839 PRJNA438111_P_NODE_8312_length_349_cov_11.809375_g7695_i0 PRJNA438111 8312 349 11.809375 41.21471875 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 167 2.41e-51   NR CEP03336.1 37360 g7695 i0 75.7 0.919770773638969 107 26 92 0 322 2 5 111 CEP03336.1 hypothetical protein PBRA_003096 [Plasmodiophora brassicae] diamond 321 167 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32035804 32035804 PRJNA438111_P_NODE_5838_length_409_cov_11.671053_g5249_i0 PRJNA438111 5838 409 11.671053 47.73460677 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 179 9.94e-53   NR CEP03995.1 37360 g5249 i0 58.8 0.997555012224939 136 56 99.8 0 2 409 206 341 CEP03995.1 hypothetical protein PBRA_009575 [Plasmodiophora brassicae] diamond 408 179 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32337157 32337157 PRJNA438111_P_NODE_31819_length_210_cov_3.613260_g31194_i0 PRJNA438111 31819 210 3.61326 7.587846 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 60.5 1.31e-8   NR CEO95599.1 37360 g31194 i0 93.8 5.92857142857143 32 2 45.7 0 113 208 296 327 CEO95599.1 hypothetical protein PBRA_004325 [Plasmodiophora brassicae] diamond 1245 60.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32715911 32715911 PRJNA438111_P_NODE_19720_length_241_cov_3.735849_g19095_i0 PRJNA438111 19720 241 3.735849 9.00339609 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 77.4 2.24e-14   NR SPQ97391.1 37360 g19095 i0 46.5 17.1410788381743 86 38 99.6 2 241 2 23 106 SPQ97391.1 unnamed protein product [Plasmodiophora brassicae] diamond 4131 77.8 0.994858611825193 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;