RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA437204" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA437204 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27644759 27644759 PRJNA437204_P_NODE_100604_length_247_cov_0.885057_g100305_i0 PRJNA437204 100604 247 0.885057 2.18609079 Candidatus Xenobia bacterium 3036772 Bacteria Bacteria 53.9 4.34e-6   NR HEY3997549.1 3036772 g100305 i0 36.5 1.68825910931174 74 46 88.7 1 219 1 239 312 HEY3997549.1 cyclic nucleotide-binding domain-containing protein [Candidatus Xenobia bacterium] diamond 417 53.9 1 Bacteria   Bacillati Vulcanimicrobiota Candidatus Xenobia       Candidatus Xenobia bacterium
27802565 27802565 PRJNA437204_P_NODE_40724_length_322_cov_2.028112_g40425_i0 PRJNA437204 40724 322 2.028112 6.53052064 Candidatus Eremiobacteraceae bacterium 3069296 Bacteria Bacteria 44.3 0.0269   NR HZW93355.1 3069296 g40425 i0 26.9 0.968944099378882 104 70 93.2 2 17 316 160 261 HZW93355.1 discoidin domain-containing protein [Candidatus Eremiobacteraceae bacterium] diamond 312 44.3 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Candidatus Eremiobacterales Candidatus Eremiobacteraceae   Candidatus Eremiobacteraceae bacterium
31055645 31055645 PRJNA437204_P_NODE_12895_length_486_cov_1.491525_g12597_i0 PRJNA437204 12895 486 1.491525 7.2488115 Candidatus Xenobia bacterium 3036772 Bacteria Bacteria 72 3.39e-11   NR GMU56021.1 3036772 g12597 i0 38 1.62962962962963 142 73 87.7 5 4 429 741 867 GMU56021.1 MAG: hypothetical protein AMXMBFR33_51670 [Candidatus Xenobia bacterium] diamond 792 72 1 Bacteria   Bacillati Vulcanimicrobiota Candidatus Xenobia       Candidatus Xenobia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;