RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA437204" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA437204 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29475549 29475549 PRJNA437204_P_NODE_56470_length_287_cov_1.439252_g56171_i0 PRJNA437204 56470 287 1.439252 4.13065324 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 66.6 2.49e-10   NR XP_068367815.1 1144522 g56171 i0 40.4 0.982578397212544 94 49 97.2 2 285 7 175 262 XP_068367815.1 Serine/threonine-protein kinase Nek5 [Tritrichomonas foetus] diamond 282 66.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31893916 31893916 PRJNA437204_P_NODE_92017_length_249_cov_0.875000_g91718_i0 PRJNA437204 92017 249 0.875 2.17875 root 1 Root_unresolved Root_unresolved 105 9.94e-26   NR XP_067772710.1 135588 g91718 i0 63.3 18.7951807228916 79 28 95.2 1 245 9 1 78 XP_067772710.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase [Histomonas meleagridis] diamond 4680 106 0.990566037735849 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;