RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA437204" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA437204 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14461576 14461576 PRJNA437204_P_NODE_53312_length_293_cov_1.750000_g53013_i0 PRJNA437204 53312 293 1.75 5.1275 Bacteria 2 Bacteria Bacteria 78.2 9.22e-15   NR WP_025208751.1 295596 g53013 i0 59.1 4.79180887372014 66 23 67.6 1 206 9 8 69 WP_025208751.1 DnaJ C-terminal domain-containing protein [Candidatus Hepatoplasma crinochetorum] diamond 1404 78.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Candidatus Hepatoplasmataceae Candidatus Hepatoplasma Candidatus Hepatoplasma crinochetorum
32856969 32856969 PRJNA437204_P_NODE_62320_length_277_cov_1.352941_g62021_i0 PRJNA437204 62320 277 1.352941 3.74764657 Mesoplasma photuris 217731 Bacteria Bacteria 45.8 0.00441   NR WP_031542597.1 217731 g62021 i0 51.1 0.509025270758123 47 21 50.9 1 32 172 121 165 WP_031542597.1 alpha/beta hydrolase family protein [Mesoplasma photuris] diamond 141 45.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Mesoplasma Mesoplasma photuris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;