RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA437204" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA437204 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16392322 16392322 PRJNA437204_P_NODE_36913_length_333_cov_1.184615_g36614_i0 PRJNA437204 36913 333 1.184615 3.94476795 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 98.6 3.700000000000001e-22   NR MES1911029.1 1215613 g36614 i0 49.1 0.990990990990991 110 55 99.1 1 331 2 197 305 MES1911029.1 hypothetical protein [Cercozoa sp. M6MM] diamond 330 98.6 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
28591882 28591882 PRJNA437204_P_NODE_122127_length_242_cov_0.911243_g121828_i0 PRJNA437204 122127 242 0.911243 2.20520806 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 85.5 1.34e-17   NR MES1910793.1 1215613 g121828 i0 57.1 2.72727272727273 70 30 86.8 0 31 240 1 70 MES1910793.1 hypothetical protein [Cercozoa sp. M6MM] diamond 660 85.5 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
30913903 30913903 PRJNA437204_P_NODE_55154_length_290_cov_0.995392_g54855_i0 PRJNA437204 55154 290 0.995392 2.8866368 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 120 4.27e-33   NR ACF24578.1 67809 g54855 i0 61.1 3.7448275862069 90 35 93.1 0 21 290 1 90 ACF24578.1 60S ribosomal protein L34 [Gymnochlora stellata] diamond 1086 120 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Gymnochlora Gymnochlora stellata
32667995 32667995 PRJNA437204_P_NODE_70860_length_263_cov_2.536842_g70561_i0 PRJNA437204 70860 263 2.536842 6.67189446 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 56.6 8.53e-8   NR MES1913255.1 1215613 g70561 i0 40.9 0.752851711026616 66 38 74.1 1 197 3 31 96 MES1913255.1 hypothetical protein [Cercozoa sp. M6MM] diamond 198 56.6 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;