RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA437204" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA437204 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26600759 26600759 PRJNA437204_P_NODE_98421_length_247_cov_0.885057_g98122_i0 PRJNA437204 98421 247 0.885057 2.18609079 Fusobacterium polymorphum 76857 Bacteria Bacteria 141 1.06e-38   NR WP_336014544.1 76857 g98122 i0 93.9 0.995951417004049 82 5 99.6 0 2 247 1 82 WP_336014544.1 poly-gamma-glutamate system protein [Fusobacterium polymorphum] diamond 246 141 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
29097087 29097087 PRJNA437204_P_NODE_94828_length_248_cov_0.880000_g94529_i0 PRJNA437204 94828 248 0.88 2.1824 Cetobacterium sp. 2071632 Bacteria Bacteria 60.1 2.74e-8   NR WP_332484049.1 2071632 g94529 i0 43.9 0.991935483870968 82 40 98 2 247 5 20 96 WP_332484049.1 DnaJ C-terminal domain-containing protein [Cetobacterium sp.] diamond 246 60.1 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;