RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA436017" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA436017 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28355458 28355458 PRJNA436017_P_NODE_1886_length_688_cov_7.327189_g1655_i0 PRJNA436017 1886 688 7.327189 50.41106032 Pseudomonadati 3379134 Bacteria Bacteria 234 2.82e-74   NR UCD79363.1 2044940 g1655 i0 53.5 2.80813953488372 213 98 92.4 1 17 652 5 217 UCD79363.1 MAG: nitroreductase family protein [Desulfobacterales bacterium] diamond 1932 236 0.991525423728814 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
29443980 29443980 PRJNA436017_P_NODE_16370_length_204_cov_0.922156_g16072_i0 PRJNA436017 16370 204 0.922156 1.88119824 Desulfuromonadales bacterium 2099678 Bacteria Bacteria 80.9 6.15e-17   NR HXV19802.1 2099678 g16072 i0 56.7 6.13235294117647 60 26 88.2 0 1 180 121 180 HXV19802.1 5-formyltetrahydrofolate cyclo-ligase [Desulfuromonadales bacterium] diamond 1251 80.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales     Desulfuromonadales bacterium
31197686 31197686 PRJNA436017_P_NODE_21975_length_174_cov_1.948905_g21677_i0 PRJNA436017 21975 174 1.948905 3.3910947 Bacteria 2 Bacteria Bacteria 56.2 5.59e-8   NR PIV06593.1 1974100 g21677 i0 78.1 2.75862068965517 32 7 55.2 0 2 97 106 137 PIV06593.1 MAG: nucleoside-diphosphate kinase [Syntrophobacterales bacterium CG03_land_8_20_14_0_80_58_14] diamond 480 56.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales     Syntrophobacterales bacterium CG03_land_8_20_14_0_80_58_14

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;