RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA436017" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA436017 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30201972 30201972 PRJNA436017_P_NODE_17212_length_198_cov_1.447205_g16914_i0 PRJNA436017 17212 198 1.447205 2.8654659 Paragonimus skrjabini miyazakii 59628 Platyhelminthes Platyhelminthes 58.5 5.39e-8   NR KAF7255177.1 59628 g16914 i0 43.8 1.92424242424242 64 33 97 1 194 3 72 132 KAF7255177.1 hypothetical protein EG68_08165 [Paragonimus skrjabini miyazakii] diamond 381 58.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Troglotrematidae Paragonimus Paragonimus skrjabini miyazakii
31893903 31893903 PRJNA436017_P_NODE_25717_length_161_cov_1.064516_g25419_i0 PRJNA436017 25717 161 1.064516 1.71387076 root 1 Root_unresolved Root_unresolved 61.2 6.71e-10   NR CDS41549.1 6211 g25419 i0 58.5 7.90062111801242 53 12 98.8 1 1 159 47 89 CDS41549.1 expressed protein [Echinococcus multilocularis] diamond 1272 61.6 0.993506493506494 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus multilocularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;