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contig_metadata

30 rows where analysis = "diamond", bioproject = "PRJNA436017" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 30 ✖

tax_clade 1

bioproject 1

  • PRJNA436017 · 30 ✖

analysis 1

  • diamond · 30 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2981399 2981399 PRJNA436017_P_NODE_1783_length_708_cov_2.751118_g1558_i0 PRJNA436017 1783 708 2.751118 19.47791544 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 191 6.01e-58   NR KAJ0392104.1 114742 g1558 i0 55.6 4.40677966101695 171 76 72.5 0 48 560 5 175 KAJ0392104.1 hypothetical protein P43SY_009801 [Pythium insidiosum] diamond 3120 191 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
9359035 9359035 PRJNA436017_P_NODE_3788_length_478_cov_2.811791_g3502_i0 PRJNA436017 3788 478 2.811791 13.44036098 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 186 7.88e-57   NR OQR84622.1 1202772 g3502 i0 62 7.17991631799163 158 59 99.2 1 476 3 45 201 OQR84622.1 40S ribosomal protein S8-2 [Achlya hypogyna] diamond 3432 186 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
10634786 10634786 PRJNA436017_P_NODE_2869_length_553_cov_3.846899_g2598_i0 PRJNA436017 2869 553 3.846899 21.27335147 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 184 5.96e-50   NR XP_008610586.1 1156394 g2598 i0 81.3 4.68173598553345 107 20 58 0 538 218 1 107 XP_008610586.1 hypothetical protein SDRG_06578 [Saprolegnia diclina VS20] diamond 2589 184 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
13184290 13184290 PRJNA436017_P_NODE_12871_length_234_cov_2.375635_g12573_i0 PRJNA436017 12871 234 2.375635 5.5589859 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 103 1.11e-25   NR KAF4040242.1 4787 g12573 i0 70.1 11.8461538461538 77 22 98.7 1 233 3 71 146 KAF4040242.1 ribosomal L5P family C-terminus [Phytophthora infestans] diamond 2772 104 0.990384615384615 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
15733425 15733425 PRJNA436017_P_NODE_22713_length_171_cov_1.731343_g22415_i0 PRJNA436017 22713 171 1.731343 2.96059653 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 75.1 1.47e-14   NR OQS02190.1 74557 g22415 i0 76.4 17.5614035087719 55 11 93 1 170 12 19 73 OQS02190.1 heat shock cognate 70 kDa protein [Thraustotheca clavata] diamond 3003 75.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
19556821 19556821 PRJNA436017_P_NODE_3536_length_497_cov_3.045652_g3254_i0 PRJNA436017 3536 497 3.045652 15.13689044 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 152 1.65e-44   NR KAG9402114.1 112091 g3254 i0 70.3 11.1187122736419 111 33 67 0 44 376 6 116 KAG9402114.1 Histone H2B [Aphanomyces cochlioides] diamond 5526 153 0.993464052287582 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
26632654 26632654 PRJNA436017_P_NODE_21781_length_175_cov_1.413043_g21483_i0 PRJNA436017 21781 175 1.413043 2.47282525 Phytophthora fragariae 53985 SAR_Eukaryotes SAR_Eukaryotes 63.9 5.06e-10   NR KAE8895698.1 53985 g21483 i0 65.3 1.68 49 17 84 0 154 8 406 454 KAE8895698.1 Ubiquitin-like modifier-activating enzyme 1 [Phytophthora fragariae] diamond 294 63.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae
26712166 26712166 PRJNA436017_P_NODE_20381_length_181_cov_1.347222_g20083_i0 PRJNA436017 20381 181 1.347222 2.43847182 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 71.2 1.47e-12   NR KAH9100136.1 100861 g20083 i0 50.8 6.46408839779006 65 26 97.8 1 178 2 2085 2149 KAH9100136.1 hypothetical protein LEN26_016139, partial [Aphanomyces euteiches] diamond 1170 71.2 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
27913348 27913348 PRJNA436017_P_NODE_27745_length_155_cov_1.313559_g27447_i0 PRJNA436017 27745 155 1.313559 2.03601645 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 83.2 3.3e-17   NR TMW69497.1 41045 g27447 i0 72.5 11.8451612903226 51 14 98.7 0 2 154 77 127 TMW69497.1 hypothetical protein Poli38472_001653 [Pythium oligandrum] diamond 1836 83.6 0.995215311004785 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
28671397 28671397 PRJNA436017_P_NODE_13707_length_226_cov_1.238095_g13409_i0 PRJNA436017 13707 226 1.238095 2.7980947 root 1 Root_unresolved Root_unresolved 107 7.16e-25   NR RHY63942.1 112090 g13409 i0 73.1 14.2699115044248 78 17 98.2 1 2 223 396 473 RHY63942.1 hypothetical protein DYB30_004637 [Aphanomyces astaci] diamond 3225 108 0.990740740740741 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
29145222 29145222 PRJNA436017_P_NODE_15749_length_208_cov_1.959064_g15451_i0 PRJNA436017 15749 208 1.959064 4.07485312 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 83.6 1.76e-18   NR TMW69057.1 41045 g15451 i0 63.2 4.90384615384615 68 25 98.1 0 3 206 49 116 TMW69057.1 hypothetical protein Poli38472_001213 [Pythium oligandrum] diamond 1020 84 0.995238095238095 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
29191738 29191738 PRJNA436017_P_NODE_10689_length_263_cov_1.345133_g10391_i0 PRJNA436017 10689 263 1.345133 3.53769979 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 48.1 6.25e-4   NR TMW57105.1 41045 g10391 i0 51.7 0.684410646387833 60 26 65 2 60 230 2704 2763 TMW57105.1 hypothetical protein Poli38472_003030 [Pythium oligandrum] diamond 180 48.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
29633261 29633261 PRJNA436017_P_NODE_23270_length_169_cov_1.469697_g22972_i0 PRJNA436017 23270 169 1.469697 2.48378793 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.00389   NR KAF0717246.1 120398 g22972 i0 60.5 1.40236686390533 38 15 67.5 0 33 146 4102 4139 KAF0717246.1 hypothetical protein As57867_002407, partial [Aphanomyces stellatus] diamond 237 44.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
30092091 30092091 PRJNA436017_P_NODE_22672_length_171_cov_2.305970_g22374_i0 PRJNA436017 22672 171 2.30597 3.9432087 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 107 1.9e-25   NR KAJ8576152.1 4785 g22374 i0 83.9 36.3508771929825 56 9 98.2 0 2 169 387 442 KAJ8576152.1 hypothetical protein ON010_g3057 [Phytophthora cinnamomi] diamond 6216 108 0.990740740740741 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
30313955 30313955 PRJNA436017_P_NODE_8832_length_294_cov_1.957198_g8534_i0 PRJNA436017 8832 294 1.957198 5.75416212 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 47 5.18e-4   NR KAF1771972.1 29920 g8534 i0 51.1 1.04081632653061 45 22 45.9 0 160 294 2 46 KAF1771972.1 hypothetical protein GQ600_10481 [Phytophthora cactorum] diamond 306 47 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
30660963 30660963 PRJNA436017_P_NODE_17973_length_193_cov_2.102564_g17675_i0 PRJNA436017 17973 193 2.102564 4.05794852 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 51.6 5.93e-6   NR KAL4172245.1 164328 g17675 i0 47.3 15.5129533678756 55 25 79.3 1 159 7 9 63 KAL4172245.1 co-chaperone [Phytophthora ramorum] diamond 2994 52 0.992307692307692 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
30818989 30818989 PRJNA436017_P_NODE_22714_length_171_cov_1.731343_g22416_i0 PRJNA436017 22714 171 1.731343 2.96059653 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 85.5 9.81e-19   NR DAZ92534.1 4803 g22416 i0 73.2 5.87719298245614 56 15 98.2 0 170 3 65 120 DAZ92534.1 TPA: hypothetical protein N0F65_012764 [Lagenidium giganteum] diamond 1005 85.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
30882085 30882085 PRJNA436017_P_NODE_1254_length_838_cov_3.721598_g1069_i0 PRJNA436017 1254 838 3.721598 31.18699124 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 257 9.569999999999999e-82   NR TMW57109.1 41045 g1069 i0 58 40.1276849642005 212 85 75.9 2 781 146 7 214 TMW57109.1 hypothetical protein Poli38472_003034 [Pythium oligandrum] diamond 33627 257 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
30928995 30928995 PRJNA436017_P_NODE_9014_length_291_cov_1.228346_g8716_i0 PRJNA436017 9014 291 1.228346 3.57448686 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 84.7 1.16e-16   NR TYZ61191.1 1485010 g8716 i0 64.5 1.27835051546392 62 22 63.9 0 2 187 95 156 TYZ61191.1 hypothetical protein PybrP1_009883 [[Pythium] brassicae (nom. inval.)] diamond 372 84.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
31071873 31071873 PRJNA436017_P_NODE_5535_length_384_cov_1.760807_g5239_i0 PRJNA436017 5535 384 1.760807 6.76149888 Viridiplantae 33090 SAR_Eukaryotes SAR_Eukaryotes 127 9.01e-33   NR KAG9404282.1 112091 g5239 i0 70.9 5.3828125 86 25 67.2 0 383 126 238 323 KAG9404282.1 Guanine nucleotide-binding protein subunit beta-2-like 1 [Aphanomyces cochlioides] diamond 2067 127 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
31434602 31434602 PRJNA436017_P_NODE_16296_length_204_cov_1.868263_g15998_i0 PRJNA436017 16296 204 1.868263 3.81125652 Phytophthora citrophthora 4793 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.0068   NR KAK1941930.1 4793 g15998 i0 42.2 0.941176470588235 64 36 92.6 1 1 189 2195 2258 KAK1941930.1 Titin [Phytophthora citrophthora] diamond 192 44.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora citrophthora
31750859 31750859 PRJNA436017_P_NODE_4297_length_446_cov_2.963325_g4005_i0 PRJNA436017 4297 446 2.963325 13.2164295 Nothophytophthora sp. Chile5 2483409 SAR_Eukaryotes SAR_Eukaryotes 120 4.23e-31   NR RLN94494.1 2483409 g4005 i0 48.3 1.98430493273543 149 73 97.5 2 438 4 1 149 RLN94494.1 hypothetical protein BBJ28_00017911 [Nothophytophthora sp. Chile5] diamond 885 120 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Nothophytophthora Nothophytophthora sp. Chile5
31767354 31767354 PRJNA436017_P_NODE_21797_length_175_cov_1.405797_g21499_i0 PRJNA436017 21797 175 1.405797 2.46014475 root 1 Root_unresolved Root_unresolved 83.6 4.74e-17   NR KUF78810.1 4792 g21499 i0 70.4 27.8228571428571 54 16 92.6 0 3 164 175 228 KUF78810.1 ATP-binding Cassette (ABC) superfamily [Phytophthora nicotianae] diamond 4869 83.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
32130834 32130834 PRJNA436017_P_NODE_18818_length_189_cov_1.026316_g18520_i0 PRJNA436017 18818 189 1.026316 1.93973724 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 46.6 8.11e-4   NR TMW58180.1 41045 g18520 i0 35 0.952380952380952 60 39 95.2 0 186 7 271 330 TMW58180.1 hypothetical protein Poli38472_011768 [Pythium oligandrum] diamond 180 46.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
32162411 32162411 PRJNA436017_P_NODE_11878_length_247_cov_1.238095_g11580_i0 PRJNA436017 11878 247 1.238095 3.05809465 Phytophthora fragariae 53985 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.0295   NR KAE8919676.1 53985 g11580 i0 50.9 0.643724696356275 53 23 60.7 1 163 14 1 53 KAE8919676.1 hypothetical protein PF009_g30021, partial [Phytophthora fragariae] diamond 159 43.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae
32193981 32193981 PRJNA436017_P_NODE_11638_length_250_cov_1.098592_g11340_i0 PRJNA436017 11638 250 1.098592 2.74648 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 73.9 1.36e-13   NR RHY87569.1 112090 g11340 i0 48.1 0.972 81 42 97.2 0 4 246 45 125 RHY87569.1 hypothetical protein DYB35_009302 [Aphanomyces astaci] diamond 243 73.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
32225689 32225689 PRJNA436017_P_NODE_5638_length_380_cov_1.244898_g5342_i0 PRJNA436017 5638 380 1.244898 4.7306124 uncultured Oomycota 179533 SAR_Eukaryotes SAR_Eukaryotes 55.1 2.41e-6   NR QCT85720.1 179533 g5342 i0 44.1 0.465789473684211 59 33 46.6 0 204 380 101 159 QCT85720.1 cytochrome c oxidase subunit II, partial [uncultured Oomycota] diamond 177 55.1 1 Eukaryota Sar   Oomycota         uncultured Oomycota
32273842 32273842 PRJNA436017_P_NODE_6758_length_343_cov_1.993464_g6461_i0 PRJNA436017 6758 343 1.993464 6.83758152 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 154 7.23e-45   NR XP_024584861.1 4781 g6461 i0 73.7 8.30903790087464 95 25 83.1 0 341 57 87 181 XP_024584861.1 adp-ribosylation factor [Plasmopara halstedii] diamond 2850 154 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
32715896 32715896 PRJNA436017_P_NODE_20940_length_179_cov_1.070423_g20642_i0 PRJNA436017 20940 179 1.070423 1.91605717 root 1 Root_unresolved Root_unresolved 65.5 1.5e-10   NR KUF97943.1 4792 g20642 i0 100 246.351955307263 30 0 50.3 0 179 90 662 691 KUF97943.1 ATP-binding Cassette (ABC) Superfamily [Phytophthora nicotianae] diamond 44097 65.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
32715897 32715897 PRJNA436017_P_NODE_24780_length_164_cov_1.204724_g24482_i0 PRJNA436017 24780 164 1.204724 1.97574736 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 42 0.0188   NR KAF0690371.1 120398 g24482 i0 47.8 3.3109756097561 46 18 84.1 1 24 161 17 56 KAF0690371.1 hypothetical protein As57867_018144 [Aphanomyces stellatus] diamond 543 42 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;