RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA436017" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA436017 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8742003 8742003 PRJNA436017_P_NODE_7827_length_316_cov_2.189964_g7530_i0 PRJNA436017 7827 316 2.189964 6.92028624 Gnathostoma spinigerum 75299 Nematoda Nematoda 66.2 5.86e-11   NR MFH4978441.1 75299 g7530 i0 61.4 4.32911392405063 57 22 54.1 0 3 173 106 162 MFH4978441.1 hypothetical protein [Gnathostoma spinigerum] diamond 1368 66.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
10634883 10634883 PRJNA436017_P_NODE_6789_length_342_cov_3.485246_g6492_i0 PRJNA436017 6789 342 3.485246 11.91954132 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 140 3.759999999999999e-40   NR KAE9554533.1 2598192 g6492 i0 62.7 4.56140350877193 102 38 89.5 0 36 341 3 104 KAE9554533.1 hypothetical protein FO519_002237 [Halicephalobus sp. NKZ332] diamond 1560 140 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
26648919 26648919 PRJNA436017_P_NODE_7461_length_325_cov_2.267361_g7164_i0 PRJNA436017 7461 325 2.267361 7.36892325 Opisthokonta 33154 Nematoda Nematoda 131 6.37e-33   NR KRY69987.1 6337 g7164 i0 61.9 26.2615384615385 97 37 89.5 0 35 325 685 781 KRY69987.1 U3 small nucleolar RNA-associated protein 15 -like protein [Trichinella pseudospiralis] diamond 8535 131 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis
28433923 28433923 PRJNA436017_P_NODE_29606_length_150_cov_1.362832_g29308_i0 PRJNA436017 29606 150 1.362832 2.044248 Steinernema carpocapsae 34508 Nematoda Nematoda 54.7 6.49e-7   NR TKR79781.1 34508 g29308 i0 48 2.74 50 26 100 0 1 150 837 886 TKR79781.1 hypothetical protein L596_013948 [Steinernema carpocapsae] diamond 411 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
28892103 28892103 PRJNA436017_P_NODE_4948_length_411_cov_1.518717_g4652_i0 PRJNA436017 4948 411 1.518717 6.24192687 Caenorhabditis 6237 Nematoda Nematoda 178 2.3599999999999993e-52   NR NP_501859.1 6239 g4652 i0 57.4 44.6861313868613 136 58 99.3 0 3 410 183 318 NP_501859.1 Small ribosomal subunit protein RACK1 [Caenorhabditis elegans] diamond 18366 178 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
30945475 30945475 PRJNA436017_P_NODE_13794_length_225_cov_1.622340_g13496_i0 PRJNA436017 13794 225 1.62234 3.650265 Rhabditida 6236 Nematoda Nematoda 87.4 4.63e-18   NR XP_024508727.1 34506 g13496 i0 56.2 5.8 73 28 97.3 1 221 3 73 141 XP_024508727.1 Legumain [Strongyloides ratti] diamond 1305 87.8 0.995444191343964 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
32605082 32605082 PRJNA436017_P_NODE_17620_length_195_cov_2.455696_g17322_i0 PRJNA436017 17620 195 2.455696 4.7886072 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 61.6 4.21e-9   NR CAD5222104.1 6326 g17322 i0 52.6 0.876923076923077 57 26 87.7 1 185 15 446 501 CAD5222104.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 171 61.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;