RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA436017" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA436017 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26632648 26632648 PRJNA436017_P_NODE_14081_length_222_cov_2.091892_g13783_i0 PRJNA436017 14081 222 2.091892 4.64400024 Myxococcaceae bacterium 2484252 Bacteria Bacteria 99.8 9.33e-23   NR RYZ13579.1 2484252 g13783 i0 63.5 2 74 27 100 0 1 222 66 139 RYZ13579.1 MAG: ABC-F family ATP-binding cassette domain-containing protein, partial [Myxococcaceae bacterium] diamond 444 99.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
28071312 28071312 PRJNA436017_P_NODE_11725_length_249_cov_1.207547_g11427_i0 PRJNA436017 11725 249 1.207547 3.00679203 Pseudomonadati 3379134 Bacteria Bacteria 67.8 8.32e-12   NR NOY87572.1 2026735 g11427 i0 60 4.19277108433735 50 20 60.2 0 249 100 125 174 NOY87572.1 AmmeMemoRadiSam system protein A [Deltaproteobacteria bacterium] diamond 1044 68.2 0.994134897360704 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29822884 29822884 PRJNA436017_P_NODE_4631_length_427_cov_2.482051_g4335_i0 PRJNA436017 4631 427 2.482051 10.59835777 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 179 2.2299999999999998e-54   NR RTZ91411.1 2026735 g4335 i0 60.5 2.62060889929742 124 49 87.1 0 54 425 24 147 RTZ91411.1 MAG: hypothetical protein DSY91_05075 [Deltaproteobacteria bacterium] diamond 1119 179 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30282210 30282210 PRJNA436017_P_NODE_25972_length_160_cov_1.252033_g25674_i0 PRJNA436017 25972 160 1.252033 2.0032528 Bacteria 2 Bacteria Bacteria 61.6 2.54e-9   NR HIM03099.1 2026763 g25674 i0 55.8 4.875 52 16 97.5 1 158 3 968 1012 HIM03099.1 pyruvate, phosphate dikinase [Myxococcales bacterium] diamond 780 61.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31371607 31371607 PRJNA436017_P_NODE_14236_length_221_cov_1.385870_g13938_i0 PRJNA436017 14236 221 1.38587 3.0627727 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 64.3 5.31e-10   NR BDD48268.1 2026735 g13938 i0 43.7 0.963800904977376 71 40 96.4 0 217 5 3 73 BDD48268.1 hypothetical protein 1 [Deltaproteobacteria bacterium] diamond 213 64.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32320840 32320840 PRJNA436017_P_NODE_26979_length_157_cov_1.300000_g26681_i0 PRJNA436017 26979 157 1.3 2.041 Plesiocystis pacifica 191768 Bacteria Bacteria 45.4 0.0013   NR WP_006973217.1 191768 g26681 i0 71 2.42675159235669 31 9 59.2 0 94 2 5 35 WP_006973217.1 adenosylhomocysteinase [Plesiocystis pacifica] diamond 381 45.4 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Plesiocystis Plesiocystis pacifica
32762451 32762451 PRJNA436017_P_NODE_11620_length_250_cov_1.436620_g11322_i0 PRJNA436017 11620 250 1.43662 3.59155 Myxococcota bacterium 2818507 Bacteria Bacteria 50.4 6.88e-6   NR MEC8422185.1 2818507 g11322 i0 42.5 0.96 80 43 92.4 1 236 6 4 83 MEC8422185.1 hypothetical protein [Myxococcota bacterium] diamond 240 50.4 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32793722 32793722 PRJNA436017_P_NODE_7460_length_325_cov_2.454861_g7163_i0 PRJNA436017 7460 325 2.454861 7.97829825 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 84.3 3.67e-18   NR HEU18094.1 2026735 g7163 i0 44.3 1.82769230769231 97 53 89.5 1 3 293 43 138 HEU18094.1 acyl-CoA thioesterase [Deltaproteobacteria bacterium] diamond 594 84.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;