RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA436017" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA436017 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28149794 28149794 PRJNA436017_P_NODE_17325_length_197_cov_1.918750_g17027_i0 PRJNA436017 17325 197 1.91875 3.7799375 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 80.9 1.88e-16   NR XP_004333661.1 1257118 g17027 i0 69.2 0.989847715736041 65 20 99 0 195 1 171 235 XP_004333661.1 actin bundling protein [Acanthamoeba castellanii str. Neff] diamond 195 80.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29886451 29886451 PRJNA436017_P_NODE_21171_length_178_cov_1.078014_g20873_i0 PRJNA436017 21171 178 1.078014 1.91886492 Paravannella minima 1443144 Discosea other_Eukaryota 99 2.35e-22   NR YP_009557774.1 1443144 g20873 i0 74.6 1.98876404494382 59 15 99.4 0 1 177 390 448 YP_009557774.1 NADH dehydrogenase subunit 4 [Paravannella minima] diamond 354 99 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
30107329 30107329 PRJNA436017_P_NODE_29172_length_151_cov_1.368421_g28874_i0 PRJNA436017 29172 151 1.368421 2.06631571 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 57 3.6e-8   NR XP_004333244.1 1257118 g28874 i0 66.7 1.62913907284768 36 12 71.5 0 113 6 70 105 XP_004333244.1 MAPEG family protein [Acanthamoeba castellanii str. Neff] diamond 246 57 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;