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contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA436017" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA436017 · 13 ✖

analysis 1

  • diamond · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10634799 10634799 PRJNA436017_P_NODE_2929_length_548_cov_2.426614_g2657_i0 PRJNA436017 2929 548 2.426614 13.29784472 Charadrius vociferus 50402 Chordata Chordata 186 2.4799999999999994e-54   NR XP_009892706.1 50402 g2657 i0 68.9 32.8138686131387 151 43 82.7 1 547 95 228 374 XP_009892706.1 PREDICTED: uncharacterized protein LOC104294757 [Charadrius vociferus] diamond 17982 186 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
26886203 26886203 PRJNA436017_P_NODE_22841_length_171_cov_1.149254_g22543_i0 PRJNA436017 22841 171 1.149254 1.96522434 Ranitomeya imitator 111125 Chordata Chordata 59.7 1.27e-8   NR XP_069595228.1 111125 g22543 i0 52.7 0.964912280701754 55 26 96.5 0 170 6 211 265 XP_069595228.1 very-long-chain 3-oxoacyl-CoA reductase [Ranitomeya imitator] diamond 165 59.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
27328839 27328839 PRJNA436017_P_NODE_28823_length_152_cov_1.330435_g28525_i0 PRJNA436017 28823 152 1.330435 2.0222612 Nyctereutes procyonoides 34880 Chordata Chordata 74.3 8.48e-15   NR CAD7688934.1 34880 g28525 i0 62 8.8421052631579 50 19 98.7 0 152 3 6 55 CAD7688934.1 unnamed protein product [Nyctereutes procyonoides] diamond 1344 74.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Nyctereutes Nyctereutes procyonoides
27692778 27692778 PRJNA436017_P_NODE_5764_length_374_cov_2.824926_g5468_i0 PRJNA436017 5764 374 2.824926 10.56522324 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 91.7 1.08e-19   NR CAL5930649.1 7748 g5468 i0 51.5 5.8475935828877 97 46 77 1 290 3 136 232 CAL5930649.1 unnamed protein product [Lampetra fluviatilis] diamond 2187 92.4 0.992424242424242 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
27833854 27833854 PRJNA436017_P_NODE_12524_length_238_cov_7.880597_g12226_i0 PRJNA436017 12524 238 7.880597 18.75582086 Bufotes viridis 30338 Chordata Chordata 42.4 0.0466   NR CAK8629749.1 30338 g12226 i0 48.6 0.441176470588235 35 18 44.1 0 23 127 329 363 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 105 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
28734506 28734506 PRJNA436017_P_NODE_7947_length_314_cov_1.512635_g7650_i0 PRJNA436017 7947 314 1.512635 4.7496739 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 55.8 2.1e-6   NR XP_002121122.3 7719 g7650 i0 39.6 1.76751592356688 91 53 86.9 1 2 274 447 535 XP_002121122.3 acyloxyacyl hydrolase-like [Ciona intestinalis] diamond 555 56.2 0.99288256227758 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
29271001 29271001 PRJNA436017_P_NODE_23309_length_169_cov_1.181818_g23011_i0 PRJNA436017 23309 169 1.181818 1.99727242 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 67.4 2.76e-11   NR XP_061852563.1 57412 g23011 i0 56.6 7.54437869822485 53 22 94.1 1 159 1 188 239 XP_061852563.1 acyloxyacyl hydrolase isoform X2 [Colius striatus] diamond 1275 67.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Coliiformes Coliidae Colius Colius striatus
29839504 29839504 PRJNA436017_P_NODE_15511_length_210_cov_1.791908_g15213_i0 PRJNA436017 15511 210 1.791908 3.7630068 Opisthokonta 33154 Chordata Chordata 45.4 0.00268   NR XP_053545809.1 8345 g15213 i0 39.7 3.92857142857143 68 31 97.1 1 3 206 126 183 XP_053545809.1 tetratricopeptide repeat protein 12 [Bombina bombina] diamond 825 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
30201974 30201974 PRJNA436017_P_NODE_23072_length_170_cov_1.172932_g22774_i0 PRJNA436017 23072 170 1.172932 1.9939844 Pelobates cultripes 61616 Chordata Chordata 59.3 4.98e-9   NR CAH2325358.1 61616 g22774 i0 53.6 6.17647058823529 56 24 95.3 1 7 168 51 106 CAH2325358.1 60S acidic ribosomal P2 [Pelobates cultripes] diamond 1050 59.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Pelobates Pelobates cultripes
30518165 30518165 PRJNA436017_P_NODE_24893_length_163_cov_2.674603_g24595_i0 PRJNA436017 24893 163 2.674603 4.35960289 Bufotes viridis 30338 Chordata Chordata 42.7 0.0128   NR CAK8629749.1 30338 g24595 i0 62.1 0.533742331288344 29 11 53.4 0 59 145 336 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 87 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
30897497 30897497 PRJNA436017_P_NODE_24554_length_165_cov_0.906250_g24256_i0 PRJNA436017 24554 165 0.90625 1.4953125 Branchiostoma belcheri 7741 Chordata Chordata 41.2 0.0459   NR XP_019615944.1 7741 g24256 i0 44.2 0.945454545454545 52 29 94.5 0 157 2 661 712 XP_019615944.1 PREDICTED: LOW QUALITY PROTEIN: ankyrin and armadillo repeat-containing protein-like [Branchiostoma belcheri] diamond 156 41.2 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
32495254 32495254 PRJNA436017_P_NODE_20299_length_181_cov_1.895833_g20001_i0 PRJNA436017 20299 181 1.895833 3.43145773 Squamata 8509 Chordata Chordata 41.6 0.0422   NR XP_026547189.1 8663 g20001 i0 61.3 1.5414364640884 31 12 51.4 0 2 94 246 276 XP_026547189.1 dynamin-1, partial [Notechis scutatus] diamond 279 42 0.990476190476191 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Notechis Notechis scutatus
32605085 32605085 PRJNA436017_P_NODE_19220_length_187_cov_0.920000_g18922_i0 PRJNA436017 19220 187 0.92 1.7204 Antrostomus carolinensis 279965 Chordata Chordata 41.2 0.0448   NR KFZ56356.1 279965 g18922 i0 48.7 0.625668449197861 39 20 62.6 0 172 56 50 88 KFZ56356.1 Coiled-coil domain-containing protein 137, partial [Antrostomus carolinensis] diamond 117 41.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Caprimulgiformes Caprimulgidae Antrostomus Antrostomus carolinensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;