RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA436017" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA436017 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4257560 4257560 PRJNA436017_P_NODE_104_length_2023_cov_3.631923_g81_i0 PRJNA436017 104 2023 3.631923 73.47380229 Pygsuia 1401266 SAR_Eukaryotes SAR_Eukaryotes 514 1.6399999999999998e-174   NR MES1909605.1 1215613 g81 i0 51.2 9.13939693524469 549 149 80.7 7 1986 355 3 437 MES1909605.1 hypothetical protein [Cercozoa sp. M6MM] diamond 18489 514 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
29601787 29601787 PRJNA436017_P_NODE_3390_length_508_cov_3.405520_g3110_i0 PRJNA436017 3390 508 3.40552 17.3000416 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 89.4 1.09e-19   NR MES1912547.1 1215613 g3110 i0 47.1 0.602362204724409 102 53 60.2 1 39 344 2 102 MES1912547.1 hypothetical protein [Cercozoa sp. M6MM] diamond 306 89.4 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
31482998 31482998 PRJNA436017_P_NODE_18636_length_190_cov_1.006536_g18338_i0 PRJNA436017 18636 190 1.006536 1.9124184 Triparma 722752 SAR_Eukaryotes SAR_Eukaryotes 60.8 7.08e-9   NR MES1910010.1 1215613 g18338 i0 60.4 1.64210526315789 53 21 83.7 0 188 30 227 279 MES1910010.1 hypothetical protein [Cercozoa sp. M6MM] diamond 312 60.8 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
31498114 31498114 PRJNA436017_P_NODE_2376_length_615_cov_1.932526_g2125_i0 PRJNA436017 2376 615 1.932526 11.8850349 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 126 1.41e-29   NR MES1911124.1 1215613 g2125 i0 53.9 4.77073170731707 141 55 66.8 5 612 202 568 702 MES1911124.1 hypothetical protein [Cercozoa sp. M6MM] diamond 2934 126 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
32495253 32495253 PRJNA436017_P_NODE_19579_length_185_cov_1.040541_g19281_i0 PRJNA436017 19579 185 1.040541 1.92500085 Triparma 722752 SAR_Eukaryotes SAR_Eukaryotes 62.8 1.41e-9   NR MES1910010.1 1215613 g19281 i0 56.7 1.8 60 26 97.3 0 181 2 225 284 MES1910010.1 hypothetical protein [Cercozoa sp. M6MM] diamond 333 62.8 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;