RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA436017" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA436017 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6808335 6808335 PRJNA436017_P_NODE_13706_length_226_cov_1.238095_g13408_i0 PRJNA436017 13706 226 1.238095 2.7980947 Theileria equi strain WA 1537102 SAR_Eukaryotes SAR_Eukaryotes 108 2.01e-25   NR XP_004830122.1 1537102 g13408 i0 62.7 0.995575221238938 75 28 99.6 0 1 225 513 587 XP_004830122.1 prolyl-tRNA synthetase, putative [Theileria equi strain WA] diamond 225 108 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria equi
18282235 18282235 PRJNA436017_P_NODE_1275_length_831_cov_3.226700_g1089_i0 PRJNA436017 1275 831 3.2267 26.813877 Neospora caninum Liverpool 572307 SAR_Eukaryotes SAR_Eukaryotes 407 5.13e-139   NR XP_003881929.1 572307 g1089 i0 76.6 10.086642599278001 252 59 91 0 758 3 12 263 XP_003881929.1 S-adenosylmethionine synthetase,related [Neospora caninum Liverpool] diamond 8382 407 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
26980871 26980871 PRJNA436017_P_NODE_2162_length_644_cov_2.126853_g1920_i0 PRJNA436017 2162 644 2.126853 13.69693332 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 261 2.67e-83   NR OEH75335.1 88456 g1920 i0 68.2 11.4689440993789 195 59 89.4 2 640 65 169 363 OEH75335.1 ribosomal protein rps5 [Cyclospora cayetanensis] diamond 7386 261 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
28608164 28608164 PRJNA436017_P_NODE_16047_length_206_cov_1.366864_g15749_i0 PRJNA436017 16047 206 1.366864 2.81573984 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 80.1 6.4e-16   NR GFE55646.1 5869 g15749 i0 64.4 9.62621359223301 59 21 85.9 0 204 28 245 303 GFE55646.1 mitochondrial phosphate carrier protein [Babesia ovis] diamond 1983 80.5 0.995031055900621 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovis
31466487 31466487 PRJNA436017_P_NODE_14336_length_220_cov_1.311475_g14038_i0 PRJNA436017 14336 220 1.311475 2.885245 Babesia duncani 323732 SAR_Eukaryotes SAR_Eukaryotes 92.4 1.11e-21   NR XP_067805124.1 323732 g14038 i0 63.5 4.95 74 26 99.5 1 220 2 18 91 XP_067805124.1 bifunctional V-ATPase proteolipid subunit C [Babesia duncani] diamond 1089 92.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia duncani
32841745 32841745 PRJNA436017_P_NODE_25160_length_162_cov_3.024000_g24862_i0 PRJNA436017 25160 162 3.024 4.89888 Babesia 5864 SAR_Eukaryotes SAR_Eukaryotes 48.5 7e-5   NR BAN66151.1 5865 g24862 i0 60.5 1.40740740740741 38 15 70.4 0 27 140 1 38 BAN66151.1 40S ribosomal protein S8 [Babesia bovis] diamond 228 48.9 0.991820040899796 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;