RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA432257" and tax_phylum = "Euglenozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA432257 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27581235 27581235 PRJNA432257_S_NODE_110944_length_165_cov_2.539062_g110563_i0 PRJNA432257 110944 165 2.539062 4.1894523 Strigomonas culicis 28005 Euglenozoa other_Eukaryota 52.4 5.25e-6   NR EPY35056.1 28005 g110563 i0 45.8 0.872727272727273 48 26 87.3 0 16 159 105 152 EPY35056.1 hypothetical protein STCU_01272 [Strigomonas culicis] diamond 144 52.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Strigomonas Strigomonas culicis
31940572 31940572 PRJNA432257_S_NODE_124877_length_153_cov_0.982759_g124496_i0 PRJNA432257 124877 153 0.982759 1.50362127 Diplonema ambulator 182243 Euglenozoa other_Eukaryota 43.1 0.00783   NR ACO50118.1 182243 g124496 i0 70.6 3.41176470588235 34 7 66.7 1 152 51 307 337 ACO50118.1 elongation factor 1 alpha-like protein, partial [Diplonema ambulator] diamond 522 43.1 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema ambulator

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;