RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA432257" and tax_phylum = "Candidatus Campbelliibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Campbelliibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA432257 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29397466 29397466 PRJNA432257_S_NODE_100049_length_176_cov_5.719424_g99668_i0 PRJNA432257 100049 176 5.719424 10.06618624 Bacteria 2 Bacteria Bacteria 66.2 2.63e-11   NR OGD67595.1 1797580 g99668 i0 75.7 7.94318181818182 37 9 63.1 0 36 146 187 223 OGD67595.1 MAG: 30S ribosomal protein S3 [Candidatus Campbellbacteria bacterium RIFCSPLOWO2_02_35_12] diamond 1398 66.6 0.993993993993994 Bacteria Bacteria candidate phyla   Candidatus Campbelliibacteriota         Candidatus Campbellbacteria bacterium RIFCSPLOWO2_02_35_12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;