RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA432257" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA432257 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27012456 27012456 PRJNA432257_S_NODE_21202_length_316_cov_2.197133_g20821_i0 PRJNA432257 21202 316 2.197133 6.94294028 Babesia bovis T2Bo 484906 SAR_Eukaryotes SAR_Eukaryotes 73.2 2.91e-14   NR XP_001610942.1 484906 g20821 i0 57.4 0.579113924050633 61 25 57 1 311 132 42 102 XP_001610942.1 putative ribosomal protein S25 [Babesia bovis T2Bo] diamond 183 73.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bovis
28339139 28339139 PRJNA432257_S_NODE_30346_length_278_cov_4.514523_g29965_i0 PRJNA432257 30346 278 4.514523 12.55037394 Plasmodium yoelii 17X 1323249 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.0231   NR ETB61003.1 1323249 g29965 i0 30.3 0.712230215827338 66 45 70.1 1 248 54 851 916 ETB61003.1 hypothetical protein YYC_01952 [Plasmodium yoelii 17X] diamond 198 43.9 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
29002613 29002613 PRJNA432257_S_NODE_61088_length_214_cov_48.909605_g60707_i0 PRJNA432257 61088 214 48.909605 104.6665547 Plasmodium falciparum 7G8 57266 SAR_Eukaryotes SAR_Eukaryotes 40.4 0.0357   NR EUR71841.1 57266 g60707 i0 36.8 0.799065420560748 57 36 79.9 0 36 206 23 79 EUR71841.1 hypothetical protein PFBG_02867 [Plasmodium falciparum 7G8] diamond 171 40.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;